{"type":"file-history-snapshot","messageId":"b16ff743-5768-4e0f-a8d5-f0e42dea81e3","snapshot":{"messageId":"b16ff743-5768-4e0f-a8d5-f0e42dea81e3","trackedFileBackups":{},"timestamp":"2026-02-11T13:37:52.473Z"},"isSnapshotUpdate":false} {"parentUuid":"c8d8a195-feeb-4ba6-bccb-2a11c82ba4f1","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"237b90d4-76fb-400e-9223-3a3754e071ff","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"type":"text","text":"[Request interrupted by user for tool use]"}]},"uuid":"92dc9d79-143d-41aa-b17e-550929b8fc52","timestamp":"2026-02-11T13:37:52.457Z"} {"parentUuid":null,"isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":"Implement the following plan:\n\n# Add Rust Language Support\n\n## Context\n\nVulnhalla currently supports C/C++ and Go for CodeQL-based vulnerability detection with LLM classification. CodeQL's Rust support reached GA in October 2025 (CodeQL 2.23.3), providing a mature `codeql/rust-all` library pack with security queries for SQL injection, path traversal, SSRF, regex injection, and more. Adding Rust support follows the established pattern used by Go.\n\n## Changes\n\n### 1. CodeQL Queries -- `data/queries/rust/`\n\n**`data/queries/rust/issues/`** -- Security vulnerability detection queries:\n\n| Query File | CWE | Description |\n|---|---|---|\n| `SQL injection.ql` | CWE-089 | Tainted data flowing into SQL queries (diesel, sqlx, rusqlite) |\n| `Path traversal.ql` | CWE-022 | User input in filesystem path operations |\n| `Server-side request forgery.ql` | CWE-918 | User input in outbound HTTP requests |\n| `Regex injection.ql` | CWE-020 | User input in regex pattern compilation |\n\nEach query uses the standard CodeQL Rust taint tracking pattern:\n```\nimport rust\nimport codeql.rust.dataflow.DataFlow\nimport codeql.rust.dataflow.TaintTracking\nimport codeql.rust.security.\n```\n\n`qlpack.yml`:\n```yaml\nname: vulnhalla-rust\nversion: 0.0.0\ndependencies:\n codeql/rust-all: \"*\"\n```\n\n**`data/queries/rust/tools/`** -- Context extraction queries for LLM analysis:\n\n| Query File | Purpose | Rust AST Classes |\n|---|---|---|\n| `FunctionTree.ql` | Function names, locations, caller relationships | `Function`, `CallExpr` |\n| `GlobalVars.ql` | Static/const items at module scope | `Static`, `Const` |\n| `Types.ql` | Struct, enum, and trait definitions | `Struct`, `Enum`, `Trait` |\n\n`qlpack.yml`:\n```yaml\nname: vulnhalla-rust-tools\nversion: 0.0.0\ndependencies:\n codeql/rust-all: \"*\"\n```\n\n### 2. LLM Prompt Templates -- `data/templates/rust/`\n\n| File | Purpose |\n|---|---|\n| `template.template` | Base prompt structure (reuse Go's format) |\n| `general.template` | Fallback hints for unknown query types |\n| `SQL injection.template` | Rust-specific SQL injection validation hints |\n| `Path traversal.template` | Rust-specific path traversal validation hints |\n| `Server-side request forgery.template` | SSRF validation hints |\n| `Regex injection.template` | Regex injection validation hints |\n\nTemplates reference Rust idioms -- e.g., checking for `sqlx::query!()` macro usage (compile-time checked), `diesel` DSL vs raw SQL, `std::path::Path` canonicalization.\n\n### 3. Pipeline Integration -- `src/pipeline.py`\n\n**Line 214**: Add `\"rust\"` to `--lang` choices:\n```python\nparser.add_argument(\"--lang\", choices=[\"c\", \"go\", \"rust\"], default=\"c\", ...)\n```\n\nNo other Python code changes required -- the language flows through the pipeline as-is:\n- `fetch_repos.py:filter_repos_by_db_and_lang()` -- \"rust\" maps directly (no special casing like c->cpp)\n- `run_codeql_queries.py:compile_and_run_codeql_queries()` -- \"rust\" maps directly to `data/queries/rust/`\n- `vulnhalla.py:build_prompt_by_template()` -- \"rust\" maps directly to `data/templates/rust/`\n- `vulnhalla_setup.py` -- already iterates all language dirs under `data/queries/`, auto-discovers `rust/`\n\n### 4. UI Update -- `src/ui/components/controls_bar.py`\n\n**Line 25**: Update the static label:\n```python\nyield Static(\"Languages: C/C++, Go, Rust\", classes=\"control-label\")\n```\n\n### 5. Documentation -- `CLAUDE.md`\n\nUpdate the language list and `--lang` reference to include `rust`.\n\n## Files Modified\n\n| File | Change |\n|---|---|\n| `src/pipeline.py` | Add \"rust\" to `--lang` choices (line 214) |\n| `src/ui/components/controls_bar.py` | Update label text (line 25) |\n| `CLAUDE.md` | Update language docs |\n\n## Files Created\n\n```\ndata/queries/rust/issues/qlpack.yml\ndata/queries/rust/issues/SQL injection.ql\ndata/queries/rust/issues/Path traversal.ql\ndata/queries/rust/issues/Server-side request forgery.ql\ndata/queries/rust/issues/Regex injection.ql\ndata/queries/rust/tools/qlpack.yml\ndata/queries/rust/tools/FunctionTree.ql\ndata/queries/rust/tools/GlobalVars.ql\ndata/queries/rust/tools/Types.ql\ndata/templates/rust/template.template\ndata/templates/rust/general.template\ndata/templates/rust/SQL injection.template\ndata/templates/rust/Path traversal.template\ndata/templates/rust/Server-side request forgery.template\ndata/templates/rust/Regex injection.template\n```\n\n## Verification\n\n1. `poetry run vulnhalla-setup` -- confirm Rust packs install without error\n2. `poetry run vulnhalla --lang rust ` -- run against a Rust repo with known CodeQL DB (e.g., a small Rust web app)\n3. `poetry run vulnhalla --local /path/to/rust-db --lang rust` -- test local DB mode\n4. `poetry run mypy src` -- type checking passes\n5. `poetry run pytest` -- existing tests pass\n6. `poetry run vulnhalla-ui` -- UI shows \"Languages: C/C++, Go, Rust\"\n\n\nIf you need specific details from before exiting plan mode (like exact code snippets, error messages, or content you generated), read the full transcript at: /home/josie/.claude/projects/-home-josie-development-personal-Vulnhalla/237b90d4-76fb-400e-9223-3a3754e071ff.jsonl"},"uuid":"b16ff743-5768-4e0f-a8d5-f0e42dea81e3","timestamp":"2026-02-11T13:37:52.454Z","planContent":"# Add Rust Language Support\n\n## Context\n\nVulnhalla currently supports C/C++ and Go for CodeQL-based vulnerability detection with LLM classification. CodeQL's Rust support reached GA in October 2025 (CodeQL 2.23.3), providing a mature `codeql/rust-all` library pack with security queries for SQL injection, path traversal, SSRF, regex injection, and more. Adding Rust support follows the established pattern used by Go.\n\n## Changes\n\n### 1. CodeQL Queries -- `data/queries/rust/`\n\n**`data/queries/rust/issues/`** -- Security vulnerability detection queries:\n\n| Query File | CWE | Description |\n|---|---|---|\n| `SQL injection.ql` | CWE-089 | Tainted data flowing into SQL queries (diesel, sqlx, rusqlite) |\n| `Path traversal.ql` | CWE-022 | User input in filesystem path operations |\n| `Server-side request forgery.ql` | CWE-918 | User input in outbound HTTP requests |\n| `Regex injection.ql` | CWE-020 | User input in regex pattern compilation |\n\nEach query uses the standard CodeQL Rust taint tracking pattern:\n```\nimport rust\nimport codeql.rust.dataflow.DataFlow\nimport codeql.rust.dataflow.TaintTracking\nimport codeql.rust.security.\n```\n\n`qlpack.yml`:\n```yaml\nname: vulnhalla-rust\nversion: 0.0.0\ndependencies:\n codeql/rust-all: \"*\"\n```\n\n**`data/queries/rust/tools/`** -- Context extraction queries for LLM analysis:\n\n| Query File | Purpose | Rust AST Classes |\n|---|---|---|\n| `FunctionTree.ql` | Function names, locations, caller relationships | `Function`, `CallExpr` |\n| `GlobalVars.ql` | Static/const items at module scope | `Static`, `Const` |\n| `Types.ql` | Struct, enum, and trait definitions | `Struct`, `Enum`, `Trait` |\n\n`qlpack.yml`:\n```yaml\nname: vulnhalla-rust-tools\nversion: 0.0.0\ndependencies:\n codeql/rust-all: \"*\"\n```\n\n### 2. LLM Prompt Templates -- `data/templates/rust/`\n\n| File | Purpose |\n|---|---|\n| `template.template` | Base prompt structure (reuse Go's format) |\n| `general.template` | Fallback hints for unknown query types |\n| `SQL injection.template` | Rust-specific SQL injection validation hints |\n| `Path traversal.template` | Rust-specific path traversal validation hints |\n| `Server-side request forgery.template` | SSRF validation hints |\n| `Regex injection.template` | Regex injection validation hints |\n\nTemplates reference Rust idioms -- e.g., checking for `sqlx::query!()` macro usage (compile-time checked), `diesel` DSL vs raw SQL, `std::path::Path` canonicalization.\n\n### 3. Pipeline Integration -- `src/pipeline.py`\n\n**Line 214**: Add `\"rust\"` to `--lang` choices:\n```python\nparser.add_argument(\"--lang\", choices=[\"c\", \"go\", \"rust\"], default=\"c\", ...)\n```\n\nNo other Python code changes required -- the language flows through the pipeline as-is:\n- `fetch_repos.py:filter_repos_by_db_and_lang()` -- \"rust\" maps directly (no special casing like c->cpp)\n- `run_codeql_queries.py:compile_and_run_codeql_queries()` -- \"rust\" maps directly to `data/queries/rust/`\n- `vulnhalla.py:build_prompt_by_template()` -- \"rust\" maps directly to `data/templates/rust/`\n- `vulnhalla_setup.py` -- already iterates all language dirs under `data/queries/`, auto-discovers `rust/`\n\n### 4. UI Update -- `src/ui/components/controls_bar.py`\n\n**Line 25**: Update the static label:\n```python\nyield Static(\"Languages: C/C++, Go, Rust\", classes=\"control-label\")\n```\n\n### 5. Documentation -- `CLAUDE.md`\n\nUpdate the language list and `--lang` reference to include `rust`.\n\n## Files Modified\n\n| File | Change |\n|---|---|\n| `src/pipeline.py` | Add \"rust\" to `--lang` choices (line 214) |\n| `src/ui/components/controls_bar.py` | Update label text (line 25) |\n| `CLAUDE.md` | Update language docs |\n\n## Files Created\n\n```\ndata/queries/rust/issues/qlpack.yml\ndata/queries/rust/issues/SQL injection.ql\ndata/queries/rust/issues/Path traversal.ql\ndata/queries/rust/issues/Server-side request forgery.ql\ndata/queries/rust/issues/Regex injection.ql\ndata/queries/rust/tools/qlpack.yml\ndata/queries/rust/tools/FunctionTree.ql\ndata/queries/rust/tools/GlobalVars.ql\ndata/queries/rust/tools/Types.ql\ndata/templates/rust/template.template\ndata/templates/rust/general.template\ndata/templates/rust/SQL injection.template\ndata/templates/rust/Path traversal.template\ndata/templates/rust/Server-side request forgery.template\ndata/templates/rust/Regex injection.template\n```\n\n## Verification\n\n1. `poetry run vulnhalla-setup` -- confirm Rust packs install without error\n2. `poetry run vulnhalla --lang rust ` -- run against a Rust repo with known CodeQL DB (e.g., a small Rust web app)\n3. `poetry run vulnhalla --local /path/to/rust-db --lang rust` -- test local DB mode\n4. `poetry run mypy src` -- type checking passes\n5. `poetry run pytest` -- existing tests pass\n6. `poetry run vulnhalla-ui` -- UI shows \"Languages: C/C++, Go, Rust\"\n"} 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{"parentUuid":"05aa51c1-5c23-4aca-a6c0-79de6b70fea1","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01FdpDna6cLAUQfFCdmekAjf","type":"tool_result","content":" 1→#!/usr/bin/env python3\n 2→\"\"\"\n 3→Pipeline orchestration for Vulnhalla.\n 4→This module coordinates the complete analysis pipeline:\n 5→1. Fetch CodeQL databases\n 6→2. Run CodeQL queries\n 7→3. Classify results with LLM\n 8→4. Open UI (optional)\n 9→\"\"\"\n 10→# Ignore pydantic warnings\n 11→import warnings\n 12→warnings.filterwarnings(\"ignore\", category=UserWarning, module=\"pydantic\")\n 13→\n 14→import argparse\n 15→import sys\n 16→from pathlib import Path\n 17→from typing import Optional\n 18→\n 19→# Add project root to Python path\n 20→PROJECT_ROOT = Path(__file__).parent.parent\n 21→if str(PROJECT_ROOT) not in sys.path:\n 22→ sys.path.insert(0, str(PROJECT_ROOT))\n 23→\n 24→from src.codeql.fetch_repos import fetch_codeql_dbs\n 25→from src.codeql.run_codeql_queries import compile_and_run_codeql_queries\n 26→from src.utils.config import get_codeql_path\n 27→from src.utils.config_validator import validate_and_exit_on_error\n 28→from src.utils.logger import setup_logging, get_logger\n 29→from src.utils.exceptions import (\n 30→ CodeQLError, CodeQLConfigError, CodeQLExecutionError,\n 31→ LLMError, LLMConfigError, LLMApiError,\n 32→ VulnhallaError\n 33→)\n 34→from src.vulnhalla import IssueAnalyzer\n 35→from src.ui.ui_app import main as ui_main\n 36→\n 37→# Initialize logging\n 38→setup_logging()\n 39→logger = get_logger(__name__)\n 40→\n 41→\n 42→def _log_exception_cause(e: Exception) -> None:\n 43→ \"\"\"\n 44→ Log the cause of an exception if available and not already included in the exception message.\n 45→ Checks both e.cause (if set via constructor) and e.__cause__ (if set via 'from e').\n 46→ \"\"\"\n 47→ cause = getattr(e, 'cause', None) or getattr(e, '__cause__', None)\n 48→ if cause:\n 49→ # Only log cause if it's not already included in the exception message\n 50→ cause_str = str(cause)\n 51→ error_str = str(e)\n 52→ if cause_str not in error_str:\n 53→ logger.error(\" Cause: %s\", cause)\n 54→\n 55→\n 56→def step1_fetch_codeql_dbs(lang: str, threads: int, repo: str, force: bool = False) -> str:\n 57→ \"\"\"\n 58→ Step 1: Fetch CodeQL databases from GitHub.\n 59→ \n 60→ Args:\n 61→ lang: Programming language code.\n 62→ threads: Number of threads for download operations.\n 63→ repo: Repository name (e.g., \"redis/redis\").\n 64→ \n 65→ Returns:\n 66→ str: Path to the directory containing downloaded databases.\n 67→ \n 68→ Raises:\n 69→ CodeQLConfigError: If configuration is invalid (e.g., missing GitHub token).\n 70→ CodeQLError: If database download or extraction fails.\n 71→ \"\"\"\n 72→ logger.info(\"\\nStep 1: Fetching CodeQL Databases\")\n 73→ logger.info(\"-\" * 60)\n 74→ logger.info(\"Fetching database for: %s\", repo)\n 75→ \n 76→ try:\n 77→ dbs_dir = fetch_codeql_dbs(lang=lang, threads=threads, repo_name=repo, force=force)\n 78→ if not dbs_dir:\n 79→ raise CodeQLError(f\"No CodeQL databases were downloaded/found for {repo}\")\n 80→ return dbs_dir\n 81→ except CodeQLConfigError as e:\n 82→ logger.error(\"[-] Step 1: Configuration error while fetching CodeQL databases: %s\", e)\n 83→ _log_exception_cause(e)\n 84→ logger.error(\" Please check your GitHub token and permissions.\")\n 85→ sys.exit(1)\n 86→ except CodeQLError as e:\n 87→ logger.error(\"[-] Step 1: Failed to fetch CodeQL databases: %s\", e)\n 88→ _log_exception_cause(e)\n 89→ logger.error(\" Please check file permissions, disk space, and GitHub API access.\")\n 90→ sys.exit(1)\n 91→\n 92→\n 93→def step2_run_codeql_queries(dbs_dir: str, lang: str, threads: int) -> None:\n 94→ \"\"\"\n 95→ Step 2: Run CodeQL queries on the downloaded databases.\n 96→ \n 97→ Args:\n 98→ dbs_dir: Path to the directory containing CodeQL databases.\n 99→ lang: Programming language code.\n 100→ threads: Number of threads for query execution.\n 101→ \n 102→ Raises:\n 103→ CodeQLConfigError: If CodeQL path configuration is invalid.\n 104→ CodeQLExecutionError: If query execution fails.\n 105→ CodeQLError: If other CodeQL-related errors occur (e.g., database access issues).\n 106→ \"\"\"\n 107→ logger.info(\"\\nStep 2: Running CodeQL Queries\")\n 108→ logger.info(\"-\" * 60)\n 109→ \n 110→ try:\n 111→ compile_and_run_codeql_queries(\n 112→ codeql_bin=get_codeql_path(),\n 113→ lang=lang,\n 114→ threads=threads,\n 115→ timeout=300,\n 116→ dbs_dir=dbs_dir\n 117→ )\n 118→ except CodeQLConfigError as e:\n 119→ logger.error(\"[-] Step 2: Configuration error while running CodeQL queries: %s\", e)\n 120→ _log_exception_cause(e)\n 121→ logger.error(\" Please check your CODEQL_PATH configuration.\")\n 122→ sys.exit(1)\n 123→ except CodeQLExecutionError as e:\n 124→ logger.error(\"[-] Step 2: Failed to execute CodeQL queries: %s\", e)\n 125→ _log_exception_cause(e)\n 126→ logger.error(\" Please check your CodeQL installation and database files.\")\n 127→ sys.exit(1)\n 128→ except CodeQLError as e:\n 129→ logger.error(\"[-] Step 2: CodeQL error while running queries: %s\", e)\n 130→ _log_exception_cause(e)\n 131→ logger.error(\" Please check your CodeQL database files and query syntax.\")\n 132→ sys.exit(1)\n 133→ \n 134→\n 135→def step3_classify_results_with_llm(dbs_dir: str, lang: str) -> None:\n 136→ \"\"\"\n 137→ Step 3: Classify CodeQL results using LLM analysis.\n 138→ \n 139→ Args:\n 140→ dbs_dir: Path to the directory containing CodeQL databases.\n 141→ lang: Programming language code.\n 142→ \n 143→ Raises:\n 144→ LLMConfigError: If LLM configuration is invalid (e.g., missing API credentials).\n 145→ LLMApiError: If LLM API call fails (e.g., network issues, rate limits).\n 146→ LLMError: If other LLM-related errors occur.\n 147→ CodeQLError: If reading CodeQL database files fails (YAML, ZIP, CSV).\n 148→ VulnhallaError: If saving analysis results to disk fails.\n 149→ \"\"\"\n 150→ logger.info(\"\\nStep 3: Classifying Results with LLM\")\n 151→ logger.info(\"-\" * 60)\n 152→ \n 153→ try:\n 154→ analyzer = IssueAnalyzer(lang=lang)\n 155→ analyzer.run(dbs_dir)\n 156→ except LLMConfigError as e:\n 157→ logger.error(\"[-] Step 3: LLM configuration error: %s\", e)\n 158→ _log_exception_cause(e)\n 159→ logger.error(\" Please check your LLM configuration and API credentials in .env file.\")\n 160→ sys.exit(1)\n 161→ except LLMApiError as e:\n 162→ logger.error(\"[-] Step 3: LLM API error: %s\", e)\n 163→ _log_exception_cause(e)\n 164→ logger.error(\" Please check your API key, network connection, and rate limits.\")\n 165→ sys.exit(1)\n 166→ except LLMError as e:\n 167→ logger.error(\"[-] Step 3: LLM error: %s\", e)\n 168→ _log_exception_cause(e)\n 169→ logger.error(\" Please check your LLM provider settings and API status.\")\n 170→ sys.exit(1)\n 171→ except CodeQLError as e:\n 172→ logger.error(\"[-] Step 3: CodeQL error while reading database files: %s\", e)\n 173→ _log_exception_cause(e)\n 174→ logger.error(\" This step reads CodeQL database files (YAML, ZIP, CSV) to prepare data for LLM analysis.\")\n 175→ logger.error(\" Please check your CodeQL databases and files are accessible.\")\n 176→ sys.exit(1)\n 177→ except VulnhallaError as e:\n 178→ logger.error(\"[-] Step 3: File system error while saving results: %s\", e)\n 179→ _log_exception_cause(e)\n 180→ logger.error(\" This step writes analysis results to disk and creates output directories.\")\n 181→ logger.error(\" Please check file permissions and disk space.\")\n 182→ sys.exit(1)\n 183→\n 184→\n 185→def step4_open_ui() -> None:\n 186→ \"\"\"\n 187→ Step 4: Open the results UI (optional).\n 188→\n 189→ Note:\n 190→ This function does not raise exceptions. UI errors are handled internally by the UI module.\n 191→ \"\"\"\n 192→ logger.info(\"\\n[4/4] Opening UI\")\n 193→ logger.info(\"-\" * 60)\n 194→ logger.info(\"[+] Pipeline completed successfully!\")\n 195→ logger.info(\"Opening results UI...\")\n 196→ ui_main()\n 197→\n 198→\n 199→def main_analyze() -> None:\n 200→ \"\"\"\n 201→ CLI entry point for the complete analysis pipeline.\n 202→ \n 203→ Expected usage: \n 204→ vulnhalla [--force] # Fetch from GitHub\n 205→ vulnhalla --local # Use local CodeQL database\n 206→ \"\"\"\n 207→ parser = argparse.ArgumentParser(\n 208→ prog=\"vulnhalla\",\n 209→ description=\"Vulnhalla - Automated CodeQL Analysis with LLM Classification\"\n 210→ )\n 211→ parser.add_argument(\"repo\", nargs=\"?\", help=\"GitHub repository in 'org/repo' format\")\n 212→ parser.add_argument(\"--force\", \"-f\", action=\"store_true\", help=\"Re-download even if database exists\")\n 213→ parser.add_argument(\"--local\", \"-l\", metavar=\"PATH\", help=\"Path to local CodeQL database (skips GitHub fetch)\")\n 214→ parser.add_argument(\"--lang\", choices=[\"c\", \"go\"], default=\"c\", help=\"Programming language to analyze (default: c)\")\n 215→ \n 216→ args = parser.parse_args()\n 217→ \n 218→ # Validate arguments\n 219→ if args.local:\n 220→ # Local database mode\n 221→ local_path = Path(args.local)\n 222→ if not local_path.exists():\n 223→ parser.error(f\"Local database path does not exist: {args.local}\")\n 224→ analyze_pipeline(repo=None, lang=args.lang, local_db_path=str(local_path))\n 225→ elif args.repo:\n 226→ # GitHub fetch mode\n 227→ if \"/\" not in args.repo:\n 228→ parser.error(\"Repository must be in format 'org/repo'\")\n 229→ analyze_pipeline(repo=args.repo, lang=args.lang, force=args.force)\n 230→ else:\n 231→ parser.error(\"Either provide a repository (org/repo) or use --local \")\n 232→\n 233→\n 234→def analyze_pipeline(\n 235→ repo: Optional[str] = None,\n 236→ lang: str = \"c\",\n 237→ threads: int = 16,\n 238→ open_ui: bool = True,\n 239→ force: bool = False,\n 240→ local_db_path: Optional[str] = None\n 241→) -> None:\n 242→ \"\"\"\n 243→ Run the complete Vulnhalla pipeline: fetch, analyze, classify, and optionally open UI.\n 244→ \n 245→ Args:\n 246→ repo: GitHub repository name (e.g., \"redis/redis\"). Required if local_db_path not provided.\n 247→ lang: Programming language code. Defaults to \"c\".\n 248→ threads: Number of threads for CodeQL operations. Defaults to 16.\n 249→ open_ui: Whether to open the UI after completion. Defaults to True.\n 250→ force: If True, re-download even if database exists. Defaults to False.\n 251→ local_db_path: Path to local CodeQL database. If provided, skips GitHub fetch.\n 252→ \n 253→ Note:\n 254→ This function catches and handles all exceptions internally, logging errors\n 255→ and exiting with code 1 on failure. It does not raise exceptions.\n 256→ \"\"\"\n 257→ logger.info(\"🚀 Starting Vulnhalla Analysis Pipeline\")\n 258→ logger.info(\"=\" * 60)\n 259→ \n 260→ # Validate configuration before starting\n 261→ try:\n 262→ validate_and_exit_on_error()\n 263→ except (CodeQLConfigError, LLMConfigError, VulnhallaError) as e:\n 264→ # Format error message for display\n 265→ message = f\"\"\"\n 266→[-] Configuration Validation Failed\n 267→============================================================\n 268→{str(e)}\n 269→============================================================\n 270→Please fix the configuration errors above and try again.\n 271→See README.md for configuration reference.\n 272→\"\"\"\n 273→ logger.error(message)\n 274→ _log_exception_cause(e)\n 275→ sys.exit(1)\n 276→ \n 277→ # Step 1: Fetch CodeQL databases (or use local path)\n 278→ if local_db_path:\n 279→ logger.info(\"\\nStep 1: Using Local CodeQL Database\")\n 280→ logger.info(\"-\" * 60)\n 281→ logger.info(\"Database path: %s\", local_db_path)\n 282→ dbs_dir = local_db_path\n 283→ else:\n 284→ dbs_dir = step1_fetch_codeql_dbs(lang, threads, repo, force)\n 285→ \n 286→ # Step 2: Run CodeQL queries\n 287→ step2_run_codeql_queries(dbs_dir, lang, threads)\n 288→ \n 289→ # Step 3: Classify results with LLM\n 290→ step3_classify_results_with_llm(dbs_dir, lang)\n 291→ \n 292→ # Step 4: Open UI (optional)\n 293→ if open_ui:\n 294→ step4_open_ui()\n 295→\n 296→\n 297→def main_ui() -> None:\n 298→ \"\"\"\n 299→ CLI entry point to open the UI without running analysis.\n 300→ \n 301→ Expected usage: vulnhalla-ui\n 302→ \"\"\"\n 303→ logger.info(\"Opening Vulnhalla UI...\")\n 304→ ui_main()\n 305→\n 306→\n 307→def main_validate() -> None:\n 308→ \"\"\"\n 309→ CLI entry point to validate configuration.\n 310→ \n 311→ Expected usage: vulnhalla-validate\n 312→ \"\"\"\n 313→ from src.utils.config_validator import validate_all_config\n 314→ \n 315→ is_valid, errors = validate_all_config()\n 316→ \n 317→ if is_valid:\n 318→ logger.info(\"[+] All configurations are valid!\")\n 319→ else:\n 320→ for error in errors:\n 321→ logger.error(error)\n 322→ sys.exit(1)\n 323→\n 324→\n 325→def main_list() -> None:\n 326→ \"\"\"\n 327→ CLI entry point to list analyzed repositories.\n 328→ \n 329→ Expected usage: vulnhalla-list\n 330→ \"\"\"\n 331→ from src.ui.results_loader import ResultsLoader\n 332→ \n 333→ results_dir = Path(\"output/results\")\n 334→ if not results_dir.exists():\n 335→ logger.info(\"No results found. Run 'vulnhalla ' first.\")\n 336→ return\n 337→ \n 338→ loader = ResultsLoader()\n 339→ \n 340→ all_issues: list = []\n 341→ results_dir_path = Path(\"output/results\")\n 342→ for lang_dir in sorted(results_dir_path.iterdir()):\n 343→ if lang_dir.is_dir():\n 344→ issues, _ = loader.load_all_issues(lang_dir.name)\n 345→ all_issues.extend(issues)\n 346→ issues = all_issues\n 347→ \n 348→ if not issues:\n 349→ logger.info(\"No analyzed repositories found.\")\n 350→ return\n 351→ \n 352→ # Group issues by repo\n 353→ repos = {}\n 354→ for issue in issues:\n 355→ repo = issue.repo\n 356→ if repo not in repos:\n 357→ repos[repo] = {\"true\": 0, \"false\": 0, \"needs_more_data to decide\": 0}\n 358→ repos[repo][issue.status] += 1\n 359→ \n 360→ logger.info(\"Analyzed repositories:\")\n 361→ logger.info(\"-\" * 50)\n 362→ for repo, counts in sorted(repos.items()):\n 363→ total = counts[\"true\"] + counts[\"false\"] + counts[\"needs_more_data to decide\"]\n 364→ logger.info(\n 365→ \" %-30s %3d issues (%d True positive, %d False positive, %d Needs more data to decide)\",\n 366→ repo, total, counts[\"true\"], counts[\"false\"], counts[\"needs_more_data to decide\"]\n 367→ )\n 368→\n 369→\n 370→def main_example() -> None:\n 371→ \"\"\"\n 372→ CLI entry point to run the example pipeline.\n 373→ \n 374→ Expected usage: vulnhalla-example\n 375→ \"\"\"\n 376→ from examples.example import main as example_main\n 377→ example_main()\n 378→\n 379→\n 380→if __name__ == '__main__':\n 381→ main_analyze()\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"9b51f5e8-9a04-4261-9b90-97c6abb68875","timestamp":"2026-02-11T13:37:59.044Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/src/pipeline.py","content":"#!/usr/bin/env python3\n\"\"\"\nPipeline orchestration for Vulnhalla.\nThis module coordinates the complete analysis pipeline:\n1. Fetch CodeQL databases\n2. Run CodeQL queries\n3. Classify results with LLM\n4. Open UI (optional)\n\"\"\"\n# Ignore pydantic warnings\nimport warnings\nwarnings.filterwarnings(\"ignore\", category=UserWarning, module=\"pydantic\")\n\nimport argparse\nimport sys\nfrom pathlib import Path\nfrom typing import Optional\n\n# Add project root to Python path\nPROJECT_ROOT = Path(__file__).parent.parent\nif str(PROJECT_ROOT) not in sys.path:\n sys.path.insert(0, str(PROJECT_ROOT))\n\nfrom src.codeql.fetch_repos import fetch_codeql_dbs\nfrom src.codeql.run_codeql_queries import compile_and_run_codeql_queries\nfrom src.utils.config import get_codeql_path\nfrom src.utils.config_validator import validate_and_exit_on_error\nfrom src.utils.logger import setup_logging, get_logger\nfrom src.utils.exceptions import (\n CodeQLError, CodeQLConfigError, CodeQLExecutionError,\n LLMError, LLMConfigError, LLMApiError,\n VulnhallaError\n)\nfrom src.vulnhalla import IssueAnalyzer\nfrom src.ui.ui_app import main as ui_main\n\n# Initialize logging\nsetup_logging()\nlogger = get_logger(__name__)\n\n\ndef _log_exception_cause(e: Exception) -> None:\n \"\"\"\n Log the cause of an exception if available and not already included in the exception message.\n Checks both e.cause (if set via constructor) and e.__cause__ (if set via 'from e').\n \"\"\"\n cause = getattr(e, 'cause', None) or getattr(e, '__cause__', None)\n if cause:\n # Only log cause if it's not already included in the exception message\n cause_str = str(cause)\n error_str = str(e)\n if cause_str not in error_str:\n logger.error(\" Cause: %s\", cause)\n\n\ndef step1_fetch_codeql_dbs(lang: str, threads: int, repo: str, force: bool = False) -> str:\n \"\"\"\n Step 1: Fetch CodeQL databases from GitHub.\n \n Args:\n lang: Programming language code.\n threads: Number of threads for download operations.\n repo: Repository name (e.g., \"redis/redis\").\n \n Returns:\n str: Path to the directory containing downloaded databases.\n \n Raises:\n CodeQLConfigError: If configuration is invalid (e.g., missing GitHub token).\n CodeQLError: If database download or extraction fails.\n \"\"\"\n logger.info(\"\\nStep 1: Fetching CodeQL Databases\")\n logger.info(\"-\" * 60)\n logger.info(\"Fetching database for: %s\", repo)\n \n try:\n dbs_dir = fetch_codeql_dbs(lang=lang, threads=threads, repo_name=repo, force=force)\n if not dbs_dir:\n raise CodeQLError(f\"No CodeQL databases were downloaded/found for {repo}\")\n return dbs_dir\n except CodeQLConfigError as e:\n logger.error(\"[-] Step 1: Configuration error while fetching CodeQL databases: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your GitHub token and permissions.\")\n sys.exit(1)\n except CodeQLError as e:\n logger.error(\"[-] Step 1: Failed to fetch CodeQL databases: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check file permissions, disk space, and GitHub API access.\")\n sys.exit(1)\n\n\ndef step2_run_codeql_queries(dbs_dir: str, lang: str, threads: int) -> None:\n \"\"\"\n Step 2: Run CodeQL queries on the downloaded databases.\n \n Args:\n dbs_dir: Path to the directory containing CodeQL databases.\n lang: Programming language code.\n threads: Number of threads for query execution.\n \n Raises:\n CodeQLConfigError: If CodeQL path configuration is invalid.\n CodeQLExecutionError: If query execution fails.\n CodeQLError: If other CodeQL-related errors occur (e.g., database access issues).\n \"\"\"\n logger.info(\"\\nStep 2: Running CodeQL Queries\")\n logger.info(\"-\" * 60)\n \n try:\n compile_and_run_codeql_queries(\n codeql_bin=get_codeql_path(),\n lang=lang,\n threads=threads,\n timeout=300,\n dbs_dir=dbs_dir\n )\n except CodeQLConfigError as e:\n logger.error(\"[-] Step 2: Configuration error while running CodeQL queries: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your CODEQL_PATH configuration.\")\n sys.exit(1)\n except CodeQLExecutionError as e:\n logger.error(\"[-] Step 2: Failed to execute CodeQL queries: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your CodeQL installation and database files.\")\n sys.exit(1)\n except CodeQLError as e:\n logger.error(\"[-] Step 2: CodeQL error while running queries: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your CodeQL database files and query syntax.\")\n sys.exit(1)\n \n\ndef step3_classify_results_with_llm(dbs_dir: str, lang: str) -> None:\n \"\"\"\n Step 3: Classify CodeQL results using LLM analysis.\n \n Args:\n dbs_dir: Path to the directory containing CodeQL databases.\n lang: Programming language code.\n \n Raises:\n LLMConfigError: If LLM configuration is invalid (e.g., missing API credentials).\n LLMApiError: If LLM API call fails (e.g., network issues, rate limits).\n LLMError: If other LLM-related errors occur.\n CodeQLError: If reading CodeQL database files fails (YAML, ZIP, CSV).\n VulnhallaError: If saving analysis results to disk fails.\n \"\"\"\n logger.info(\"\\nStep 3: Classifying Results with LLM\")\n logger.info(\"-\" * 60)\n \n try:\n analyzer = IssueAnalyzer(lang=lang)\n analyzer.run(dbs_dir)\n except LLMConfigError as e:\n logger.error(\"[-] Step 3: LLM configuration error: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your LLM configuration and API credentials in .env file.\")\n sys.exit(1)\n except LLMApiError as e:\n logger.error(\"[-] Step 3: LLM API error: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your API key, network connection, and rate limits.\")\n sys.exit(1)\n except LLMError as e:\n logger.error(\"[-] Step 3: LLM error: %s\", e)\n _log_exception_cause(e)\n logger.error(\" Please check your LLM provider settings and API status.\")\n sys.exit(1)\n except CodeQLError as e:\n logger.error(\"[-] Step 3: CodeQL error while reading database files: %s\", e)\n _log_exception_cause(e)\n logger.error(\" This step reads CodeQL database files (YAML, ZIP, CSV) to prepare data for LLM analysis.\")\n logger.error(\" Please check your CodeQL databases and files are accessible.\")\n sys.exit(1)\n except VulnhallaError as e:\n logger.error(\"[-] Step 3: File system error while saving results: %s\", e)\n _log_exception_cause(e)\n logger.error(\" This step writes analysis results to disk and creates output directories.\")\n logger.error(\" Please check file permissions and disk space.\")\n sys.exit(1)\n\n\ndef step4_open_ui() -> None:\n \"\"\"\n Step 4: Open the results UI (optional).\n\n Note:\n This function does not raise exceptions. UI errors are handled internally by the UI module.\n \"\"\"\n logger.info(\"\\n[4/4] Opening UI\")\n logger.info(\"-\" * 60)\n logger.info(\"[+] Pipeline completed successfully!\")\n logger.info(\"Opening results UI...\")\n ui_main()\n\n\ndef main_analyze() -> None:\n \"\"\"\n CLI entry point for the complete analysis pipeline.\n \n Expected usage: \n vulnhalla [--force] # Fetch from GitHub\n vulnhalla --local # Use local CodeQL database\n \"\"\"\n parser = argparse.ArgumentParser(\n prog=\"vulnhalla\",\n description=\"Vulnhalla - Automated CodeQL Analysis with LLM Classification\"\n )\n parser.add_argument(\"repo\", nargs=\"?\", help=\"GitHub repository in 'org/repo' format\")\n parser.add_argument(\"--force\", \"-f\", action=\"store_true\", help=\"Re-download even if database exists\")\n parser.add_argument(\"--local\", \"-l\", metavar=\"PATH\", help=\"Path to local CodeQL database (skips GitHub fetch)\")\n parser.add_argument(\"--lang\", choices=[\"c\", \"go\"], default=\"c\", help=\"Programming language to analyze (default: c)\")\n \n args = parser.parse_args()\n \n # Validate arguments\n if args.local:\n # Local database mode\n local_path = Path(args.local)\n if not local_path.exists():\n parser.error(f\"Local database path does not exist: {args.local}\")\n analyze_pipeline(repo=None, lang=args.lang, local_db_path=str(local_path))\n elif args.repo:\n # GitHub fetch mode\n if \"/\" not in args.repo:\n parser.error(\"Repository must be in format 'org/repo'\")\n analyze_pipeline(repo=args.repo, lang=args.lang, force=args.force)\n else:\n parser.error(\"Either provide a repository (org/repo) or use --local \")\n\n\ndef analyze_pipeline(\n repo: Optional[str] = None,\n lang: str = \"c\",\n threads: int = 16,\n open_ui: bool = True,\n force: bool = False,\n local_db_path: Optional[str] = None\n) -> None:\n \"\"\"\n Run the complete Vulnhalla pipeline: fetch, analyze, classify, and optionally open UI.\n \n Args:\n repo: GitHub repository name (e.g., \"redis/redis\"). Required if local_db_path not provided.\n lang: Programming language code. Defaults to \"c\".\n threads: Number of threads for CodeQL operations. Defaults to 16.\n open_ui: Whether to open the UI after completion. Defaults to True.\n force: If True, re-download even if database exists. Defaults to False.\n local_db_path: Path to local CodeQL database. If provided, skips GitHub fetch.\n \n Note:\n This function catches and handles all exceptions internally, logging errors\n and exiting with code 1 on failure. It does not raise exceptions.\n \"\"\"\n logger.info(\"🚀 Starting Vulnhalla Analysis Pipeline\")\n logger.info(\"=\" * 60)\n \n # Validate configuration before starting\n try:\n validate_and_exit_on_error()\n except (CodeQLConfigError, LLMConfigError, VulnhallaError) as e:\n # Format error message for display\n message = f\"\"\"\n[-] Configuration Validation Failed\n============================================================\n{str(e)}\n============================================================\nPlease fix the configuration errors above and try again.\nSee README.md for configuration reference.\n\"\"\"\n logger.error(message)\n _log_exception_cause(e)\n sys.exit(1)\n \n # Step 1: Fetch CodeQL databases (or use local path)\n if local_db_path:\n logger.info(\"\\nStep 1: Using Local CodeQL Database\")\n logger.info(\"-\" * 60)\n logger.info(\"Database path: %s\", local_db_path)\n dbs_dir = local_db_path\n else:\n dbs_dir = step1_fetch_codeql_dbs(lang, threads, repo, force)\n \n # Step 2: Run CodeQL queries\n step2_run_codeql_queries(dbs_dir, lang, threads)\n \n # Step 3: Classify results with LLM\n step3_classify_results_with_llm(dbs_dir, lang)\n \n # Step 4: Open UI (optional)\n if open_ui:\n step4_open_ui()\n\n\ndef main_ui() -> None:\n \"\"\"\n CLI entry point to open the UI without running analysis.\n \n Expected usage: vulnhalla-ui\n \"\"\"\n logger.info(\"Opening Vulnhalla UI...\")\n ui_main()\n\n\ndef main_validate() -> None:\n \"\"\"\n CLI entry point to validate configuration.\n \n Expected usage: vulnhalla-validate\n \"\"\"\n from src.utils.config_validator import validate_all_config\n \n is_valid, errors = validate_all_config()\n \n if is_valid:\n logger.info(\"[+] All configurations are valid!\")\n else:\n for error in errors:\n logger.error(error)\n sys.exit(1)\n\n\ndef main_list() -> None:\n \"\"\"\n CLI entry point to list analyzed repositories.\n \n Expected usage: vulnhalla-list\n \"\"\"\n from src.ui.results_loader import ResultsLoader\n \n results_dir = Path(\"output/results\")\n if not results_dir.exists():\n logger.info(\"No results found. Run 'vulnhalla ' first.\")\n return\n \n loader = ResultsLoader()\n \n all_issues: list = []\n results_dir_path = Path(\"output/results\")\n for lang_dir in sorted(results_dir_path.iterdir()):\n if lang_dir.is_dir():\n issues, _ = loader.load_all_issues(lang_dir.name)\n all_issues.extend(issues)\n issues = all_issues\n \n if not issues:\n logger.info(\"No analyzed repositories found.\")\n return\n \n # Group issues by repo\n repos = {}\n for issue in issues:\n repo = issue.repo\n if repo not in repos:\n repos[repo] = {\"true\": 0, \"false\": 0, \"needs_more_data to decide\": 0}\n repos[repo][issue.status] += 1\n \n logger.info(\"Analyzed repositories:\")\n logger.info(\"-\" * 50)\n for repo, counts in sorted(repos.items()):\n total = counts[\"true\"] + counts[\"false\"] + counts[\"needs_more_data to decide\"]\n logger.info(\n \" %-30s %3d issues (%d True positive, %d False positive, %d Needs more data to decide)\",\n repo, total, counts[\"true\"], counts[\"false\"], counts[\"needs_more_data to decide\"]\n )\n\n\ndef main_example() -> None:\n \"\"\"\n CLI entry point to run the example pipeline.\n \n Expected usage: vulnhalla-example\n \"\"\"\n from examples.example import main as example_main\n example_main()\n\n\nif __name__ == '__main__':\n main_analyze()","numLines":381,"startLine":1,"totalLines":381}},"sourceToolAssistantUUID":"05aa51c1-5c23-4aca-a6c0-79de6b70fea1"} {"parentUuid":"9b51f5e8-9a04-4261-9b90-97c6abb68875","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_016sgACzDoRvzMC1rGu2JZ7H","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01UL7PbpYfnagM3BsEcGUAKq","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/src/ui/components/controls_bar.py"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":3,"cache_creation_input_tokens":10944,"cache_read_input_tokens":16746,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":10944},"output_tokens":9,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2Nb3r8EpYLGx9BxqwsX","type":"assistant","uuid":"c091265b-b5db-447e-ac21-a28e083da457","timestamp":"2026-02-11T13:37:59.428Z"} {"parentUuid":"c091265b-b5db-447e-ac21-a28e083da457","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01UL7PbpYfnagM3BsEcGUAKq","parentToolUseID":"toolu_01UL7PbpYfnagM3BsEcGUAKq","uuid":"f8b0a0ed-5e3d-4141-a654-0e739078785b","timestamp":"2026-02-11T13:37:59.429Z"} {"parentUuid":"f8b0a0ed-5e3d-4141-a654-0e739078785b","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01UL7PbpYfnagM3BsEcGUAKq","toolUseID":"toolu_01UL7PbpYfnagM3BsEcGUAKq","timestamp":"2026-02-11T13:37:59.479Z","uuid":"ff17a75f-7d33-46b9-9f46-04f5c7fc68ed"} {"parentUuid":"ff17a75f-7d33-46b9-9f46-04f5c7fc68ed","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01UL7PbpYfnagM3BsEcGUAKq","toolUseID":"toolu_01UL7PbpYfnagM3BsEcGUAKq","timestamp":"2026-02-11T13:37:59.479Z","uuid":"dbdf4edb-793d-46d2-851d-1712819f67c3"} {"parentUuid":"c091265b-b5db-447e-ac21-a28e083da457","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01UL7PbpYfnagM3BsEcGUAKq","type":"tool_result","content":" 1→#!/usr/bin/env python3\n 2→\"\"\"\n 3→Controls bar component for Vulnhalla UI.\n 4→\"\"\"\n 5→\n 6→from textual.containers import Container, Horizontal, Vertical\n 7→from textual.widgets import Static, Label, Select, Button\n 8→from textual.app import ComposeResult\n 9→\n 10→\n 11→class ControlsBar(Container):\n 12→ \"\"\"\n 13→ Bottom horizontal bar with controls, filters, and actions.\n 14→ \"\"\"\n 15→ \n 16→ def compose(self) -> ComposeResult:\n 17→ \"\"\"Compose the controls bar layout.\n 18→\n 19→ Creates the bottom bar with language information, filters,\n 20→ action buttons and keyboard shortcut help text.\n 21→ \"\"\"\n 22→ with Vertical():\n 23→ # Language label only\n 24→ with Horizontal():\n 25→ yield Static(\"Languages: C/C++, Go\", classes=\"control-label\")\n 26→ # Filter and buttons\n 27→ with Horizontal():\n 28→ yield Label(\"Filter by llm decision:\", classes=\"control-label\")\n 29→ yield Select(\n 30→ [(\"All\", \"all\"), (\"True Positive\", \"true\"), (\"False Positive\", \"false\"), (\"Needs more Info to decide\", \"more\")],\n 31→ value=\"all\",\n 32→ id=\"filter-select\"\n 33→ )\n 34→ yield Button(\"Refresh\", id=\"refresh-btn\")\n 35→ yield Button(\"Run Analysis\", id=\"run-analysis-btn\")\n 36→ yield Static(\"\")\n 37→ # Key Bindings help text\n 38→ with Horizontal():\n 39→ yield Label(\"Key Bindings:\", classes=\"control-label\")\n 40→ yield Static(\"↑/↓: Navigate | Tab: Switch focus | Enter: Show details | /: Search | [: Resize left | ]: Resize right | r: Reload | q: Quit\", classes=\"help-text\")\n 41→\n 42→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"10636ae9-22e2-4e40-b60f-11db3c966841","timestamp":"2026-02-11T13:37:59.478Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/src/ui/components/controls_bar.py","content":"#!/usr/bin/env python3\n\"\"\"\nControls bar component for Vulnhalla UI.\n\"\"\"\n\nfrom textual.containers import Container, Horizontal, Vertical\nfrom textual.widgets import Static, Label, Select, Button\nfrom textual.app import ComposeResult\n\n\nclass ControlsBar(Container):\n \"\"\"\n Bottom horizontal bar with controls, filters, and actions.\n \"\"\"\n \n def compose(self) -> ComposeResult:\n \"\"\"Compose the controls bar layout.\n\n Creates the bottom bar with language information, filters,\n action buttons and keyboard shortcut help text.\n \"\"\"\n with Vertical():\n # Language label only\n with Horizontal():\n yield Static(\"Languages: C/C++, Go\", classes=\"control-label\")\n # Filter and buttons\n with Horizontal():\n yield Label(\"Filter by llm decision:\", classes=\"control-label\")\n yield Select(\n [(\"All\", \"all\"), (\"True Positive\", \"true\"), (\"False Positive\", \"false\"), (\"Needs more Info to decide\", \"more\")],\n value=\"all\",\n id=\"filter-select\"\n )\n yield Button(\"Refresh\", id=\"refresh-btn\")\n yield Button(\"Run Analysis\", id=\"run-analysis-btn\")\n yield Static(\"\")\n # Key Bindings help text\n with Horizontal():\n yield Label(\"Key Bindings:\", classes=\"control-label\")\n yield Static(\"↑/↓: Navigate | Tab: Switch focus | Enter: Show details | /: Search | [: Resize left | ]: Resize right | r: Reload | q: Quit\", classes=\"help-text\")\n\n","numLines":42,"startLine":1,"totalLines":42}},"sourceToolAssistantUUID":"c091265b-b5db-447e-ac21-a28e083da457"} {"parentUuid":"10636ae9-22e2-4e40-b60f-11db3c966841","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_016sgACzDoRvzMC1rGu2JZ7H","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01MeAEe9tHneyiDzpbBhpsiy","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/CLAUDE.md"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":3,"cache_creation_input_tokens":10944,"cache_read_input_tokens":16746,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":10944},"output_tokens":9,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2Nb3r8EpYLGx9BxqwsX","type":"assistant","uuid":"7cbfd373-cba9-4eba-8e32-835236b9e5f8","timestamp":"2026-02-11T13:37:59.917Z"} {"parentUuid":"7cbfd373-cba9-4eba-8e32-835236b9e5f8","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01MeAEe9tHneyiDzpbBhpsiy","parentToolUseID":"toolu_01MeAEe9tHneyiDzpbBhpsiy","uuid":"65896266-b9d0-4447-915d-e6ae4063e966","timestamp":"2026-02-11T13:37:59.919Z"} {"parentUuid":"65896266-b9d0-4447-915d-e6ae4063e966","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01MeAEe9tHneyiDzpbBhpsiy","toolUseID":"toolu_01MeAEe9tHneyiDzpbBhpsiy","timestamp":"2026-02-11T13:37:59.966Z","uuid":"cc576072-c24c-4645-9c1b-50b40311c778"} {"parentUuid":"cc576072-c24c-4645-9c1b-50b40311c778","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01MeAEe9tHneyiDzpbBhpsiy","toolUseID":"toolu_01MeAEe9tHneyiDzpbBhpsiy","timestamp":"2026-02-11T13:37:59.966Z","uuid":"bef18030-2132-4424-8178-a5da5097d51c"} {"parentUuid":"7cbfd373-cba9-4eba-8e32-835236b9e5f8","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01MeAEe9tHneyiDzpbBhpsiy","type":"tool_result","content":" 1→# CLAUDE.md\n 2→\n 3→This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.\n 4→\n 5→## What This Project Is\n 6→\n 7→Vulnhalla is a CyberArk security research tool that combines CodeQL static analysis with LLM-based classification to reduce false positives in vulnerability detection. It fetches CodeQL databases from GitHub, runs queries against them, then uses an LLM (via LiteLLM) to classify each finding as true positive, false positive, or needs-more-data.\n 8→\n 9→## Commands\n 10→\n 11→```bash\n 12→# Install\n 13→poetry env use 3.12\n 14→poetry install\n 15→poetry run vulnhalla-setup # Initialize CodeQL packs (required first run)\n 16→\n 17→# Run analysis\n 18→poetry run vulnhalla redis/redis # Analyze a GitHub repo\n 19→poetry run vulnhalla redis/redis --force # Re-download database\n 20→poetry run vulnhalla --local /path/to/db # Local CodeQL database\n 21→\n 22→# Other entry points\n 23→poetry run vulnhalla-ui # Open results UI without running analysis\n 24→poetry run vulnhalla-validate # Validate configuration\n 25→poetry run vulnhalla-list # List analyzed repos and issue counts\n 26→poetry run vulnhalla-example # Run example pipeline (vlc, redis)\n 27→\n 28→# Tests and type checking\n 29→poetry run pytest # Run all tests\n 30→poetry run pytest tests/test_smoke.py::test_name # Single test\n 31→poetry run mypy src # Static type checking\n 32→```\n 33→\n 34→## Architecture\n 35→\n 36→**Pipeline flow** (orchestrated by `src/pipeline.py`):\n 37→\n 38→1. **Fetch** (`src/codeql/fetch_repos.py`) -- Download CodeQL databases from GitHub API\n 39→2. **Query** (`src/codeql/run_codeql_queries.py`) -- Compile and run CodeQL queries against databases\n 40→3. **Analyze** (`src/vulnhalla.py` / `IssueAnalyzer`) -- Extract code snippets, build prompts, run LLM classification\n 41→4. **UI** (`src/ui/ui_app.py`) -- Textual-based terminal UI to browse results\n 42→\n 43→**Module layout:**\n 44→\n 45→- `src/codeql/` -- CodeQL database operations: fetching, querying, DB lookups (`db_lookup.py`)\n 46→- `src/llm/llm_analyzer.py` -- LiteLLM integration with tool-calling; LLM invokes tools like `get_function_code`, `get_caller_function`, `get_class` to gather context before classifying\n 47→- `src/ui/` -- Textual terminal UI; `components/` has panels (issues list, details, controls, splitter)\n 48→- `src/utils/` -- Config (`config.py`, `llm_config.py`), logging (`logger.py`), shared I/O (`common_functions.py`), config validation, custom exceptions\n 49→- `data/queries/cpp/` -- CodeQL queries (issues/ and tools/); `data/templates/cpp/` -- LLM prompt templates\n 50→\n 51→**LLM classification status codes** (used throughout results JSON):\n 52→- `1337` = True Positive (vulnerability confirmed)\n 53→- `1007` = False Positive (code is secure)\n 54→- `7331` = Needs More Data\n 55→- `3713` = Likely not a security issue, needs more info\n 56→\n 57→**Output structure:** `output/databases/`, `output/results/`, `output/zip_dbs/` (all gitignored)\n 58→\n 59→## Conventions\n 60→\n 61→- Python 3.10--3.13 only (3.14+ blocked by grpcio)\n 62→- Use `from src.utils.logger import get_logger; logger = get_logger(__name__)` -- never `print()` for application messages (`print()` is only acceptable for interactive CLI prompts and `\\r` progress indicators)\n 63→- Custom exception hierarchy rooted at `VulnhallaError` in `src/utils/exceptions/`\n 64→- Type hints on all new functions; mypy configured with per-module relaxations in `pyproject.toml`\n 65→- C/C++ (`cpp`) and Go (`go`) queries are supported; use `--lang go` to analyze Go repositories\n 66→- LLM provider is configured via `.env` (see `.env.example`); LiteLLM supports OpenAI, Azure, Gemini, Bedrock, Anthropic, Mistral, Groq, Ollama, and others\n 67→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"66f94923-8b3e-4c38-b088-a378eea07731","timestamp":"2026-02-11T13:37:59.965Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/CLAUDE.md","content":"# CLAUDE.md\n\nThis file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.\n\n## What This Project Is\n\nVulnhalla is a CyberArk security research tool that combines CodeQL static analysis with LLM-based classification to reduce false positives in vulnerability detection. It fetches CodeQL databases from GitHub, runs queries against them, then uses an LLM (via LiteLLM) to classify each finding as true positive, false positive, or needs-more-data.\n\n## Commands\n\n```bash\n# Install\npoetry env use 3.12\npoetry install\npoetry run vulnhalla-setup # Initialize CodeQL packs (required first run)\n\n# Run analysis\npoetry run vulnhalla redis/redis # Analyze a GitHub repo\npoetry run vulnhalla redis/redis --force # Re-download database\npoetry run vulnhalla --local /path/to/db # Local CodeQL database\n\n# Other entry points\npoetry run vulnhalla-ui # Open results UI without running analysis\npoetry run vulnhalla-validate # Validate configuration\npoetry run vulnhalla-list # List analyzed repos and issue counts\npoetry run vulnhalla-example # Run example pipeline (vlc, redis)\n\n# Tests and type checking\npoetry run pytest # Run all tests\npoetry run pytest tests/test_smoke.py::test_name # Single test\npoetry run mypy src # Static type checking\n```\n\n## Architecture\n\n**Pipeline flow** (orchestrated by `src/pipeline.py`):\n\n1. **Fetch** (`src/codeql/fetch_repos.py`) -- Download CodeQL databases from GitHub API\n2. **Query** (`src/codeql/run_codeql_queries.py`) -- Compile and run CodeQL queries against databases\n3. **Analyze** (`src/vulnhalla.py` / `IssueAnalyzer`) -- Extract code snippets, build prompts, run LLM classification\n4. **UI** (`src/ui/ui_app.py`) -- Textual-based terminal UI to browse results\n\n**Module layout:**\n\n- `src/codeql/` -- CodeQL database operations: fetching, querying, DB lookups (`db_lookup.py`)\n- `src/llm/llm_analyzer.py` -- LiteLLM integration with tool-calling; LLM invokes tools like `get_function_code`, `get_caller_function`, `get_class` to gather context before classifying\n- `src/ui/` -- Textual terminal UI; `components/` has panels (issues list, details, controls, splitter)\n- `src/utils/` -- Config (`config.py`, `llm_config.py`), logging (`logger.py`), shared I/O (`common_functions.py`), config validation, custom exceptions\n- `data/queries/cpp/` -- CodeQL queries (issues/ and tools/); `data/templates/cpp/` -- LLM prompt templates\n\n**LLM classification status codes** (used throughout results JSON):\n- `1337` = True Positive (vulnerability confirmed)\n- `1007` = False Positive (code is secure)\n- `7331` = Needs More Data\n- `3713` = Likely not a security issue, needs more info\n\n**Output structure:** `output/databases/`, `output/results/`, `output/zip_dbs/` (all gitignored)\n\n## Conventions\n\n- Python 3.10--3.13 only (3.14+ blocked by grpcio)\n- Use `from src.utils.logger import get_logger; logger = get_logger(__name__)` -- never `print()` for application messages (`print()` is only acceptable for interactive CLI prompts and `\\r` progress indicators)\n- Custom exception hierarchy rooted at `VulnhallaError` in `src/utils/exceptions/`\n- Type hints on all new functions; mypy configured with per-module relaxations in `pyproject.toml`\n- C/C++ (`cpp`) and Go (`go`) queries are supported; use `--lang go` to analyze Go repositories\n- LLM provider is configured via `.env` (see `.env.example`); LiteLLM supports OpenAI, Azure, Gemini, Bedrock, Anthropic, Mistral, Groq, Ollama, and others\n","numLines":67,"startLine":1,"totalLines":67}},"sourceToolAssistantUUID":"7cbfd373-cba9-4eba-8e32-835236b9e5f8"} {"parentUuid":"66f94923-8b3e-4c38-b088-a378eea07731","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"Now let me read the Go query files and templates to understand the patterns.","signature":"EvQBCkYICxgCKkC8eCuSAM76gk5WohM6FoMCNSmueWejxi4zJFEIY9cr3AMJBwQWtZyREpPyx8ws5vQKRVbHjrkm6ElPd/8FUk1/EgyxYrQ+pRmIAewoFJ4aDMU69lKHR/lwM4pUKyIwITpubuf50lx+J2s3aYyvpjepnBIkrJXGjemxpB9rPlFpQtWsOVjnPbdNWE7/lSuvKlxItIO74WPkrLpfuDYatn2mDI4+wNkrkSVNENnSp/ojpjocubY1SC0xDiPPDKmGwboBkynAwrIDWywRqiIX6p++gcn0rPJHBKvpkFkjDKPwh4am7HgSL0V0b/q2+BgB"}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"ce20a13e-4bcf-4394-9797-382520b8fe88","timestamp":"2026-02-11T13:38:04.502Z"} {"parentUuid":"ce20a13e-4bcf-4394-9797-382520b8fe88","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"text","text":"Now let me read the Go queries and templates to follow the exact same patterns."}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"6eb68d64-d809-4765-a1c4-876749323f7f","timestamp":"2026-02-11T13:38:05.290Z"} 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{"parentUuid":"6ed85fba-6b91-42a4-80dc-bae60dc11586","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01EyaQYubMn5fH8mzCR7DsJK","type":"tool_result","content":" 1→name: vulnhalla-go\n 2→version: 0.0.0\n 3→dependencies:\n 4→ codeql/go-all: \"*\"\n 5→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"c7e9ed96-2fe4-4d9a-a010-b2ae0857833d","timestamp":"2026-02-11T13:38:06.143Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/qlpack.yml","content":"name: vulnhalla-go\nversion: 0.0.0\ndependencies:\n codeql/go-all: \"*\"\n","numLines":5,"startLine":1,"totalLines":5}},"sourceToolAssistantUUID":"6ed85fba-6b91-42a4-80dc-bae60dc11586"} {"parentUuid":"c7e9ed96-2fe4-4d9a-a010-b2ae0857833d","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/qlpack.yml"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"e2640534-4b8a-415c-9229-fa5e0b9f537e","timestamp":"2026-02-11T13:38:06.685Z"} {"parentUuid":"e2640534-4b8a-415c-9229-fa5e0b9f537e","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","parentToolUseID":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","uuid":"8656252a-43c9-4fbc-bd07-99f03fdb6904","timestamp":"2026-02-11T13:38:06.687Z"} {"parentUuid":"8656252a-43c9-4fbc-bd07-99f03fdb6904","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","toolUseID":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","timestamp":"2026-02-11T13:38:06.729Z","uuid":"5139e155-17b5-4763-b6e0-cd749e4b8912"} {"parentUuid":"5139e155-17b5-4763-b6e0-cd749e4b8912","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","toolUseID":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","timestamp":"2026-02-11T13:38:06.729Z","uuid":"4a032b6e-1bfd-44d4-baad-03bb18059364"} {"parentUuid":"e2640534-4b8a-415c-9229-fa5e0b9f537e","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01Anrg6WvgnNz79qC6RAGfVJ","type":"tool_result","content":" 1→name: vulnhalla-go-tools\n 2→version: 0.0.0\n 3→dependencies:\n 4→ codeql/go-all: \"*\"\n 5→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"17372142-fa50-4b6d-a467-a1db225060eb","timestamp":"2026-02-11T13:38:06.728Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/qlpack.yml","content":"name: vulnhalla-go-tools\nversion: 0.0.0\ndependencies:\n codeql/go-all: \"*\"\n","numLines":5,"startLine":1,"totalLines":5}},"sourceToolAssistantUUID":"e2640534-4b8a-415c-9229-fa5e0b9f537e"} {"parentUuid":"17372142-fa50-4b6d-a467-a1db225060eb","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_015MZqkab2kvBZNDMbr5bggo","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/SQL injection.ql"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"9cf61b96-6c69-4759-bb96-7aef76911792","timestamp":"2026-02-11T13:38:07.374Z"} {"parentUuid":"9cf61b96-6c69-4759-bb96-7aef76911792","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_015MZqkab2kvBZNDMbr5bggo","parentToolUseID":"toolu_015MZqkab2kvBZNDMbr5bggo","uuid":"f54443e2-6744-4c31-9af9-785b7be15be4","timestamp":"2026-02-11T13:38:07.375Z"} {"parentUuid":"f54443e2-6744-4c31-9af9-785b7be15be4","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_015MZqkab2kvBZNDMbr5bggo","toolUseID":"toolu_015MZqkab2kvBZNDMbr5bggo","timestamp":"2026-02-11T13:38:07.417Z","uuid":"74e84071-3318-4f2c-a856-3fd14ce33772"} {"parentUuid":"74e84071-3318-4f2c-a856-3fd14ce33772","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_015MZqkab2kvBZNDMbr5bggo","toolUseID":"toolu_015MZqkab2kvBZNDMbr5bggo","timestamp":"2026-02-11T13:38:07.417Z","uuid":"ac390eda-4285-4fc1-9bcb-87c9d3ef3710"} {"parentUuid":"9cf61b96-6c69-4759-bb96-7aef76911792","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_015MZqkab2kvBZNDMbr5bggo","type":"tool_result","content":" 1→/**\n 2→ * @name SQL injection\n 3→ * @description Building SQL queries from user-controlled sources is vulnerable\n 4→ * to insertion of malicious SQL code by the user.\n 5→ * @kind path-problem\n 6→ * @id go/sql-injection\n 7→ * @problem.severity error\n 8→ * @security-severity 8.8\n 9→ * @precision high\n 10→ * @tags security\n 11→ * external/cwe/cwe-089\n 12→ */\n 13→\n 14→import go\n 15→import semmle.go.dataflow.TaintTracking\n 16→import semmle.go.security.SqlInjection\n 17→import SqlInjection::Flow::PathGraph\n 18→\n 19→from SqlInjection::Flow::PathNode source, SqlInjection::Flow::PathNode sink\n 20→where SqlInjection::Flow::flowPath(source, sink)\n 21→select sink.getNode(), source, sink,\n 22→ \"This query depends on a $@.\", source.getNode(), \"user-provided value\"\n 23→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"9fc4b31a-0a43-42d3-be94-ed6b8153e998","timestamp":"2026-02-11T13:38:07.416Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/SQL injection.ql","content":"/**\n * @name SQL injection\n * @description Building SQL queries from user-controlled sources is vulnerable\n * to insertion of malicious SQL code by the user.\n * @kind path-problem\n * @id go/sql-injection\n * @problem.severity error\n * @security-severity 8.8\n * @precision high\n * @tags security\n * external/cwe/cwe-089\n */\n\nimport go\nimport semmle.go.dataflow.TaintTracking\nimport semmle.go.security.SqlInjection\nimport SqlInjection::Flow::PathGraph\n\nfrom SqlInjection::Flow::PathNode source, SqlInjection::Flow::PathNode sink\nwhere SqlInjection::Flow::flowPath(source, sink)\nselect sink.getNode(), source, sink,\n \"This query depends on a $@.\", source.getNode(), \"user-provided value\"\n","numLines":23,"startLine":1,"totalLines":23}},"sourceToolAssistantUUID":"9cf61b96-6c69-4759-bb96-7aef76911792"} {"parentUuid":"9fc4b31a-0a43-42d3-be94-ed6b8153e998","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/Path traversal.ql"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"b162b42e-dac7-469d-941f-8556ac0d2643","timestamp":"2026-02-11T13:38:07.708Z"} {"parentUuid":"b162b42e-dac7-469d-941f-8556ac0d2643","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","parentToolUseID":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","uuid":"662664cf-756b-426f-a221-c056f7040ebd","timestamp":"2026-02-11T13:38:07.710Z"} {"parentUuid":"662664cf-756b-426f-a221-c056f7040ebd","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","toolUseID":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","timestamp":"2026-02-11T13:38:07.742Z","uuid":"992de686-b193-478b-adb6-6910227f5841"} {"parentUuid":"992de686-b193-478b-adb6-6910227f5841","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","toolUseID":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","timestamp":"2026-02-11T13:38:07.742Z","uuid":"bf60e7c7-196d-4abb-af05-a99ca3280b42"} {"parentUuid":"b162b42e-dac7-469d-941f-8556ac0d2643","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_014KtDXp8Ktz7hAUjhEHQzDE","type":"tool_result","content":" 1→/**\n 2→ * @name Path traversal\n 3→ * @description Accessing files and directories with user-controlled paths may allow\n 4→ * an attacker to access unexpected resources.\n 5→ * @kind path-problem\n 6→ * @id go/path-traversal\n 7→ * @problem.severity error\n 8→ * @security-severity 7.5\n 9→ * @precision high\n 10→ * @tags security\n 11→ * external/cwe/cwe-022\n 12→ */\n 13→\n 14→import go\n 15→import semmle.go.dataflow.TaintTracking\n 16→import semmle.go.security.TaintedPath\n 17→import TaintedPath::Flow::PathGraph\n 18→\n 19→from TaintedPath::Flow::PathNode source, TaintedPath::Flow::PathNode sink\n 20→where TaintedPath::Flow::flowPath(source, sink)\n 21→select sink.getNode(), source, sink,\n 22→ \"This path depends on a $@.\", source.getNode(), \"user-provided value\"\n 23→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"1c0d1147-ae3b-465b-a430-da9abb7a7f94","timestamp":"2026-02-11T13:38:07.742Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/Path traversal.ql","content":"/**\n * @name Path traversal\n * @description Accessing files and directories with user-controlled paths may allow\n * an attacker to access unexpected resources.\n * @kind path-problem\n * @id go/path-traversal\n * @problem.severity error\n * @security-severity 7.5\n * @precision high\n * @tags security\n * external/cwe/cwe-022\n */\n\nimport go\nimport semmle.go.dataflow.TaintTracking\nimport semmle.go.security.TaintedPath\nimport TaintedPath::Flow::PathGraph\n\nfrom TaintedPath::Flow::PathNode source, TaintedPath::Flow::PathNode sink\nwhere TaintedPath::Flow::flowPath(source, sink)\nselect sink.getNode(), source, sink,\n \"This path depends on a $@.\", source.getNode(), \"user-provided value\"\n","numLines":23,"startLine":1,"totalLines":23}},"sourceToolAssistantUUID":"b162b42e-dac7-469d-941f-8556ac0d2643"} {"parentUuid":"1c0d1147-ae3b-465b-a430-da9abb7a7f94","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_018wjNU6DMECJ1fMvtvURX7E","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/Command injection.ql"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"f894031d-4c5b-4ae9-be27-895e3849edb7","timestamp":"2026-02-11T13:38:08.260Z"} {"parentUuid":"f894031d-4c5b-4ae9-be27-895e3849edb7","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_018wjNU6DMECJ1fMvtvURX7E","parentToolUseID":"toolu_018wjNU6DMECJ1fMvtvURX7E","uuid":"c1a10157-2a63-44fa-b7f1-d762af948df7","timestamp":"2026-02-11T13:38:08.261Z"} {"parentUuid":"c1a10157-2a63-44fa-b7f1-d762af948df7","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_018wjNU6DMECJ1fMvtvURX7E","toolUseID":"toolu_018wjNU6DMECJ1fMvtvURX7E","timestamp":"2026-02-11T13:38:08.301Z","uuid":"47489442-366d-4c50-acfd-7c63f03b52e9"} {"parentUuid":"47489442-366d-4c50-acfd-7c63f03b52e9","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_018wjNU6DMECJ1fMvtvURX7E","toolUseID":"toolu_018wjNU6DMECJ1fMvtvURX7E","timestamp":"2026-02-11T13:38:08.301Z","uuid":"3d4a4313-2864-4779-bd5e-a679b5c58d5d"} {"parentUuid":"f894031d-4c5b-4ae9-be27-895e3849edb7","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_018wjNU6DMECJ1fMvtvURX7E","type":"tool_result","content":" 1→/**\n 2→ * @name Command injection\n 3→ * @description Building OS commands from user-controlled sources is vulnerable\n 4→ * to insertion of malicious command arguments by the user.\n 5→ * @kind path-problem\n 6→ * @id go/command-injection\n 7→ * @problem.severity error\n 8→ * @security-severity 9.8\n 9→ * @precision high\n 10→ * @tags security\n 11→ * external/cwe/cwe-078\n 12→ */\n 13→\n 14→import go\n 15→import semmle.go.dataflow.TaintTracking\n 16→import semmle.go.security.CommandInjection\n 17→import CommandInjection::Flow::PathGraph\n 18→\n 19→from CommandInjection::Flow::PathNode source, CommandInjection::Flow::PathNode sink\n 20→where CommandInjection::Flow::flowPath(source, sink)\n 21→select sink.getNode(), source, sink,\n 22→ \"This command depends on a $@.\", source.getNode(), \"user-provided value\"\n 23→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"5619ef9b-7f44-47b1-93b7-6f76c62e3010","timestamp":"2026-02-11T13:38:08.300Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/issues/Command injection.ql","content":"/**\n * @name Command injection\n * @description Building OS commands from user-controlled sources is vulnerable\n * to insertion of malicious command arguments by the user.\n * @kind path-problem\n * @id go/command-injection\n * @problem.severity error\n * @security-severity 9.8\n * @precision high\n * @tags security\n * external/cwe/cwe-078\n */\n\nimport go\nimport semmle.go.dataflow.TaintTracking\nimport semmle.go.security.CommandInjection\nimport CommandInjection::Flow::PathGraph\n\nfrom CommandInjection::Flow::PathNode source, CommandInjection::Flow::PathNode sink\nwhere CommandInjection::Flow::flowPath(source, sink)\nselect sink.getNode(), source, sink,\n \"This command depends on a $@.\", source.getNode(), \"user-provided value\"\n","numLines":23,"startLine":1,"totalLines":23}},"sourceToolAssistantUUID":"f894031d-4c5b-4ae9-be27-895e3849edb7"} 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{"parentUuid":"4dd9a0ee-d8a0-4f42-956c-57ec71125676","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","parentToolUseID":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","uuid":"dcf6ef72-c03f-4353-aa08-d05d219a5a1b","timestamp":"2026-02-11T13:38:08.883Z"} {"parentUuid":"dcf6ef72-c03f-4353-aa08-d05d219a5a1b","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","toolUseID":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","timestamp":"2026-02-11T13:38:08.933Z","uuid":"ec9a430e-8bb4-4e44-bcc5-ecfd6816e29d"} {"parentUuid":"ec9a430e-8bb4-4e44-bcc5-ecfd6816e29d","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","toolUseID":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","timestamp":"2026-02-11T13:38:08.933Z","uuid":"3415d088-c004-4d42-8836-371c0ee9fedf"} {"parentUuid":"4dd9a0ee-d8a0-4f42-956c-57ec71125676","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01TiBDq9ufYzfYrSNyrGkCsz","type":"tool_result","content":" 1→import go\n 2→\n 3→string get_caller(DeclaredFunction f) {\n 4→ if exists(CallExpr c | c.getTarget() = f)\n 5→ then\n 6→ exists(CallExpr c | c.getTarget() = f |\n 7→ result =\n 8→ c.getEnclosingFunction().getLocation().getFile().getAbsolutePath() + \":\" +\n 9→ c.getEnclosingFunction().getLocation().getStartLine().toString()\n 10→ )\n 11→ else result = \"\"\n 12→}\n 13→\n 14→from DeclaredFunction f\n 15→where exists(f.getLocation().getFile().getRelativePath())\n 16→select f.getName() as function_name, f.getLocation().getFile().getAbsolutePath() as file,\n 17→ f.getLocation().getStartLine() as start_line, file + \":\" + start_line.toString() as function_id,\n 18→ f.getLocation().getEndLine() as end_line, get_caller(f) as caller_id\n 19→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"904f2829-31f6-4daa-9081-11f5b11943fd","timestamp":"2026-02-11T13:38:08.932Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/FunctionTree.ql","content":"import go\n\nstring get_caller(DeclaredFunction f) {\n if exists(CallExpr c | c.getTarget() = f)\n then\n exists(CallExpr c | c.getTarget() = f |\n result =\n c.getEnclosingFunction().getLocation().getFile().getAbsolutePath() + \":\" +\n c.getEnclosingFunction().getLocation().getStartLine().toString()\n )\n else result = \"\"\n}\n\nfrom DeclaredFunction f\nwhere exists(f.getLocation().getFile().getRelativePath())\nselect f.getName() as function_name, f.getLocation().getFile().getAbsolutePath() as file,\n f.getLocation().getStartLine() as start_line, file + \":\" + start_line.toString() as function_id,\n f.getLocation().getEndLine() as end_line, get_caller(f) as caller_id\n","numLines":19,"startLine":1,"totalLines":19}},"sourceToolAssistantUUID":"4dd9a0ee-d8a0-4f42-956c-57ec71125676"} {"parentUuid":"904f2829-31f6-4daa-9081-11f5b11943fd","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/GlobalVars.ql"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"624ce747-1fee-447a-b58b-9ce3b58ea76c","timestamp":"2026-02-11T13:38:09.453Z"} {"parentUuid":"624ce747-1fee-447a-b58b-9ce3b58ea76c","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","parentToolUseID":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","uuid":"93c998cc-d49a-48fe-b8bd-f2ced62b283f","timestamp":"2026-02-11T13:38:09.455Z"} {"parentUuid":"93c998cc-d49a-48fe-b8bd-f2ced62b283f","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","toolUseID":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","timestamp":"2026-02-11T13:38:09.491Z","uuid":"d4dba91d-93d5-4996-84fe-1c81af6661a8"} {"parentUuid":"d4dba91d-93d5-4996-84fe-1c81af6661a8","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","toolUseID":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","timestamp":"2026-02-11T13:38:09.491Z","uuid":"afa3cea5-62c5-41d8-887a-eda2ce2fae97"} {"parentUuid":"624ce747-1fee-447a-b58b-9ce3b58ea76c","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01XLFXeG6Xzg4WWNKpkzXzc7","type":"tool_result","content":" 1→import go\n 2→\n 3→from DeclaredVariable v\n 4→where\n 5→ v.getScope() instanceof PackageScope and\n 6→ exists(v.getLocation().getFile().getRelativePath())\n 7→select v.getName() as global_var_name, v.getLocation().getFile().getAbsolutePath() as file,\n 8→ v.getLocation().getStartLine() as start_line, v.getLocation().getEndLine() as end_line\n 9→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"8538c2e9-a9fc-41d6-9755-ba4a144cc434","timestamp":"2026-02-11T13:38:09.490Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/GlobalVars.ql","content":"import go\n\nfrom DeclaredVariable v\nwhere\n v.getScope() instanceof PackageScope and\n exists(v.getLocation().getFile().getRelativePath())\nselect v.getName() as global_var_name, v.getLocation().getFile().getAbsolutePath() as file,\n v.getLocation().getStartLine() as start_line, v.getLocation().getEndLine() as end_line\n","numLines":9,"startLine":1,"totalLines":9}},"sourceToolAssistantUUID":"624ce747-1fee-447a-b58b-9ce3b58ea76c"} {"parentUuid":"8538c2e9-a9fc-41d6-9755-ba4a144cc434","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01LfPnr6Lgqj2n3WYSYvMrv6","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/Types.ql"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":8183,"cache_read_input_tokens":27690,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":8183},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NbbVeAaq788N8zkZgb","type":"assistant","uuid":"f9e97d2a-2bb9-49fc-a630-20af4757c542","timestamp":"2026-02-11T13:38:09.829Z"} {"parentUuid":"f9e97d2a-2bb9-49fc-a630-20af4757c542","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","parentToolUseID":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","uuid":"904e9fb6-2a66-4bb3-9ab9-a60ee075561a","timestamp":"2026-02-11T13:38:09.834Z"} {"parentUuid":"904e9fb6-2a66-4bb3-9ab9-a60ee075561a","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","toolUseID":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","timestamp":"2026-02-11T13:38:09.875Z","uuid":"69a3178c-6e65-41d2-8501-4a41ad3daaf3"} {"parentUuid":"69a3178c-6e65-41d2-8501-4a41ad3daaf3","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","toolUseID":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","timestamp":"2026-02-11T13:38:09.875Z","uuid":"651b9901-f54a-470e-b5e1-37667f09f19a"} {"parentUuid":"f9e97d2a-2bb9-49fc-a630-20af4757c542","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_011Fp9r6FPqrQJC9kJWf1V4U","type":"tool_result","content":" 1→import go\n 2→\n 3→private string getType(Type t) {\n 4→ t instanceof StructType and result = \"Class\"\n 5→ or\n 6→ t instanceof InterfaceType and result = \"UserType\"\n 7→}\n 8→\n 9→from TypeSpec ts\n 10→where\n 11→ exists(ts.getLocation().getFile().getRelativePath()) and\n 12→ (ts.getTypeExpr().getType() instanceof StructType or\n 13→ ts.getTypeExpr().getType() instanceof InterfaceType)\n 14→select getType(ts.getTypeExpr().getType()) as type, ts.getName() as name,\n 15→ ts.getLocation().getFile().getAbsolutePath() as file,\n 16→ ts.getLocation().getStartLine() as start_line, ts.getLocation().getEndLine() as end_line,\n 17→ ts.getName() as simple_name\n 18→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"88263851-1ad4-4b28-b0d0-319a93093e89","timestamp":"2026-02-11T13:38:09.874Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/queries/go/tools/Types.ql","content":"import go\n\nprivate string getType(Type t) {\n t instanceof StructType and result = \"Class\"\n or\n t instanceof InterfaceType and result = \"UserType\"\n}\n\nfrom TypeSpec ts\nwhere\n exists(ts.getLocation().getFile().getRelativePath()) and\n (ts.getTypeExpr().getType() instanceof StructType or\n ts.getTypeExpr().getType() instanceof InterfaceType)\nselect getType(ts.getTypeExpr().getType()) as type, ts.getName() as name,\n ts.getLocation().getFile().getAbsolutePath() as file,\n ts.getLocation().getStartLine() as start_line, ts.getLocation().getEndLine() as end_line,\n ts.getName() as simple_name\n","numLines":18,"startLine":1,"totalLines":18}},"sourceToolAssistantUUID":"f9e97d2a-2bb9-49fc-a630-20af4757c542"} {"parentUuid":"88263851-1ad4-4b28-b0d0-319a93093e89","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","message":{"model":"claude-opus-4-6","id":"msg_01YQpHQPMPxCxaneRtj1u4fC","type":"message","role":"assistant","content":[{"type":"text","text":"Now let me read the Go templates."}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":3150,"cache_read_input_tokens":35873,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":3150},"output_tokens":1,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2NcKrL3WENMDvfcAwrs","type":"assistant","uuid":"345957fc-7c18-44b0-bc5e-fbc039f26b39","timestamp":"2026-02-11T13:38:14.765Z"} 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${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01M4qs72uHzsqbXuuQePZiJV","toolUseID":"toolu_01M4qs72uHzsqbXuuQePZiJV","timestamp":"2026-02-11T13:38:15.314Z","uuid":"34c08c3e-9740-4d64-af2f-ddc3bcac36b1"} {"parentUuid":"34c08c3e-9740-4d64-af2f-ddc3bcac36b1","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01M4qs72uHzsqbXuuQePZiJV","toolUseID":"toolu_01M4qs72uHzsqbXuuQePZiJV","timestamp":"2026-02-11T13:38:15.314Z","uuid":"39481185-90bb-4fe6-b107-e84a28ab6433"} {"parentUuid":"0e308dc2-f38d-4a07-8dc6-f22534a6c769","isSidechain":false,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"38e696df-c214-4727-8dd7-5f2b34102f50","version":"2.1.38","gitBranch":"main","slug":"cozy-snacking-plum","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01M4qs72uHzsqbXuuQePZiJV","type":"tool_result","content":" 1→### Issue Overview\n 2→Name: {name}\n 3→Description: {description}\n 4→Message: {message}\n 5→Location: {location}\n 6→\n 7→### Hints for Validation\n 8→{hints}\n 9→\n 10→### Code\n 11→{code}\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. 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Is this a real security issue that you can exploit?\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"08d0da53-f4b4-4b81-9e03-5ca6e62d6a4d","timestamp":"2026-02-11T13:38:15.747Z","toolUseResult":{"type":"text","file":{"filePath":"/home/josie/development/personal/Vulnhalla/data/templates/go/general.template","content":"1. 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Is user input passed directly to exec.Command or exec.CommandContext as an argument?\n 3→2. Is the command constructed via string concatenation or fmt.Sprintf and then passed to a shell (e.g., sh -c)?\n 4→3. Is there any input validation, allowlisting, or sanitization before the command is built?\n 5→4. Does the taint flow from the source (e.g., http.Request) actually reach the exec call?\n 6→Use the tools to get all data needed.\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. 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