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{"parentUuid":"36c246c9-7b08-477c-b084-c695b9203525","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01NYSAnJAhEQKRyshzEUjnLX","type":"tool_result","content":" 1→# Vulnhalla \n 2→# Automated CodeQL Analysis with LLM Classification\n 3→\n 4→
\n 5→ \"Vulnhalla\"\n 6→
\n 7→\n 8→For a detailed overview of the research and motivation behind Vulnhalla, see the official CyberArk Threat Research blog post:\n 9→\n 10→**[Vulnhalla: Picking the True Vulnerabilities from the CodeQL Haystack](https://www.cyberark.com/resources/threat-research-blog/vulnhalla-picking-the-true-vulnerabilities-from-the-codeql-haystack)**\n 11→\n 12→### Vulnhalla automates the complete security analysis pipeline:\n 13→\n 14→1. **Fetching repositories** of a given programming language from GitHub\n 15→2. **Downloading** their corresponding [CodeQL](https://github.com/github/codeql) databases (if available)\n 16→3. **Running CodeQL queries** on those databases to detect security or code-quality issues\n 17→4. **Post-processing** the results with an LLM (ChatGPT, Gemini, etc.) to classify and filter issues\n 18→\n 19→---\n 20→\n 21→## 🚀 Quick Start\n 22→\n 23→### Step 1: Prerequisites\n 24→\n 25→Before starting, ensure you have:\n 26→\n 27→- **Python 3.10 – 3.13** (Python 3.11 or 3.12 recommended)\n 28→ - Python 3.14+ is not supported (this tool uses grpcio which is not supported by Python 3.14+)\n 29→ - Download from [python.org](https://www.python.org/downloads/)\n 30→\n 31→- **CodeQL CLI**\n 32→ - Download from [CodeQL CLI releases](https://github.com/github/codeql-cli-binaries/releases)\n 33→ - Make sure `codeql` is in your PATH, or you'll set the path in `.env` (see Step 2)\n 34→\n 35→- **(Optional) GitHub API token**\n 36→ - For higher rate limits when downloading databases\n 37→ - Get from [GitHub Settings > Tokens](https://github.com/settings/tokens)\n 38→\n 39→- **LLM API key**\n 40→ - OpenAI, Azure, Gemini, or Bedrock credentials (depending on your provider)\n 41→\n 42→### Step 2: Configure Environment\n 43→\n 44→All configuration is in a single file: `.env`\n 45→\n 46→1. **Clone the repository:**\n 47→```bash\n 48→git clone https://github.com/cyberark/Vulnhalla\n 49→cd Vulnhalla\n 50→```\n 51→\n 52→2. **Copy `.env.example` to `.env`:**\n 53→```bash\n 54→cp .env.example .env # macOS / Linux\n 55→Copy-Item .env.example .env # Windows (PowerShell)\n 56→```\n 57→\n 58→3. **Edit `.env` and fill in your values:**\n 59→\n 60→**Example for OpenAI:**\n 61→```env\n 62→CODEQL_PATH=codeql\n 63→GITHUB_TOKEN=ghp_your_token_here\n 64→PROVIDER=openai\n 65→MODEL=gpt-4o\n 66→OPENAI_API_KEY=your-api-key-here\n 67→LLM_TEMPERATURE=0.2\n 68→LLM_TOP_P=0.2\n 69→\n 70→# Optional: Logging Configuration\n 71→LOG_LEVEL=INFO # DEBUG, INFO, WARNING, ERROR\n 72→LOG_FILE= # Optional: path to log file (e.g., logs/vulnhalla.log)\n 73→LOG_FORMAT=default # default or json\n 74→# LOG_VERBOSE_CONSOLE=false # If true, WARNING/ERROR use full format (timestamp - logger - level - message)\n 75→```\n 76→\n 77→> **📖 For complete configuration reference:** See [Configuration Reference](#-configuration-reference) below for all supported providers (OpenAI, Azure, Gemini, Bedrock), required/optional variables, and detailed examples.\n 78→\n 79→### Step 3: Install Poetry (Recommended: pipx)\n 80→\n 81→\n 82→**Windows (PowerShell):**\n 83→```powershell\n 84→# List available Python versions\n 85→py -0p\n 86→\n 87→# Pick any supported Python: 3.10 / 3.11 / 3.12 / 3.13\n 88→py -3.12 -m pip install --user -U pipx\n 89→py -3.12 -m pipx ensurepath\n 90→# Close and reopen terminal (required)\n 91→pipx install poetry\n 92→poetry --version\n 93→```\n 94→\n 95→**macOS / Linux:**\n 96→```bash\n 97→# Check your Python version\n 98→python3 --version\n 99→\n 100→# Use any supported Python: 3.10 / 3.11 / 3.12 / 3.13\n 101→python3 -m pip install --user -U pipx\n 102→python3 -m pipx ensurepath\n 103→# Restart terminal (required)\n 104→pipx install poetry\n 105→poetry --version\n 106→```\n 107→\n 108→### Step 4: Install Dependencies and Setup\n 109→\n 110→\n 111→**Windows (PowerShell):**\n 112→```powershell\n 113→# Pick one supported version you have: 3.10 / 3.11 / 3.12 / 3.13\n 114→poetry env use 3.12 # Force Poetry to use a supported Python version if you have multiple versions installed\n 115→poetry install\n 116→poetry run vulnhalla-setup\n 117→```\n 118→\n 119→**macOS / Linux:**\n 120→```bash\n 121→# Pick one supported version you have: 3.10 / 3.11 / 3.12 / 3.13\n 122→poetry env use 3.12 # Force Poetry to use a supported Python version if you have multiple versions installed\n 123→poetry install\n 124→poetry run vulnhalla-setup\n 125→```\n 126→\n 127→### Step 5: Run the Pipeline\n 128→\n 129→```bash\n 130→# Analyze a specific repository, for example:\n 131→poetry run vulnhalla redis/redis\n 132→\n 133→# Re-download even if database already exists\n 134→poetry run vulnhalla redis/redis --force\n 135→\n 136→# Show help\n 137→poetry run vulnhalla --help\n 138→```\n 139→\n 140→This will automatically:\n 141→1. Fetch CodeQL databases\n 142→2. Run CodeQL queries on all downloaded databases\n 143→3. Analyze results with LLM and save to `output/results/`\n 144→4. Open the UI to browse results\n 145→\n 146→#### Using a Local CodeQL Database\n 147→\n 148→If you already have a CodeQL database on disk (e.g., created manually or from a previous run), you can skip the GitHub fetch step using the `--local` / `-l` flag:\n 149→\n 150→**Windows (PowerShell):**\n 151→```powershell\n 152→poetry run vulnhalla --local C:\\path\\to\\my-codeql-db\n 153→```\n 154→\n 155→**macOS / Linux:**\n 156→```bash\n 157→poetry run vulnhalla --local /path/to/my-codeql-db\n 158→```\n 159→\n 160→> **Note:** The `--local` flag expects a CodeQL **database** directory, not a source code folder. You can verify by checking that the folder contains a `codeql-database.yml` file.\n 161→\n 162→### Additional Commands \n 163→\n 164→```bash\n 165→# Open UI to view existing results (without running analysis)\n 166→poetry run vulnhalla-ui\n 167→\n 168→# Validate configuration: CodeQL, LLM, Logging (without running analysis)\n 169→poetry run vulnhalla-validate\n 170→\n 171→# List analyzed repositories and their issue counts\n 172→poetry run vulnhalla-list\n 173→\n 174→# Run example pipeline (analyzes videolan/vlc and redis/redis)\n 175→poetry run vulnhalla-example\n 176→```\n 177→\n 178→---\n 179→\n 180→## 🖥️ User Interface (UI)\n 181→\n 182→Vulnhalla includes a full-featured User Interface for browsing and exploring analysis results.\n 183→\n 184→### Running the UI\n 185→\n 186→```bash\n 187→poetry run vulnhalla-ui\n 188→```\n 189→\n 190→### UI Layout\n 191→\n 192→The UI displays a two-panel top area with a controls bar at the bottom:\n 193→\n 194→**Top Area (side-by-side, resizable):**\n 195→\n 196→- **Left Panel (Issues List):**\n 197→ - DataTable showing: **ID**, **Repo**, **Issue Name**, **File**, **LLM decision**, **Manual decision**\n 198→ - Issues count and sort indicator\n 199→ - Search input box at the bottom, updates as you type (case-insensitive).\n 200→\n 201→- **Right Panel (Details):**\n 202→ - **LLM decision Section**: Shows the LLM's classification (True Positive, False Positive, or Needs More Data)\n 203→ - **Metadata Section**: Issue name, Repo, File, Line, Type, Function name\n 204→ - **Code Section**: \n 205→ - 📌 Initial Code Context (first code snippet the LLM saw)\n 206→ - 📥 Additional Code (code that the LLM requested during the conversation) - only shown if additional code exists\n 207→ - Vulnerable line highlighted in red\n 208→ - **Summary Section**: LLM final answer/decision\n 209→ - **Manual Decision Select**: Dropdown at the bottom to set manual verdict (True Positive, False Positive, Uncertain, or Not Set)\n 210→\n 211→**Bottom Controls Bar:**\n 212→\n 213→- Language: C (only language currently supported)\n 214→- Filter by llm desicion dropdown: All, True Positive, False Positive, Needs more Info to decide\n 215→- Action buttons: Refresh, Run Analysis\n 216→- Key bindings help text\n 217→\n 218→### Key Bindings\n 219→\n 220→- `↑`/`↓` - Navigate issue list (row-by-row)\n 221→- `Tab` / `Shift+Tab` - Switch focus between panels\n 222→- `Enter` - Show details for selected issue\n 223→- `/` - Focus search input box (in left panel)\n 224→- `Esc` - Clear search and return focus to issues table\n 225→- `r` - Reload results from disk\n 226→- `[` / `]` - Resize left/right panels (adjust split position)\n 227→- `q` - Quit application\n 228→\n 229→### Interactive Features\n 230→\n 231→#### Column Sorting\n 232→\n 233→- **Click any column header** to sort by that column\n 234→- Default sorting: by Repo (ascending), then by ID (ascending)\n 235→\n 236→#### Resizable Panels\n 237→\n 238→- **Draggable divider** between Issues List and Details panels\n 239→- **Mouse**: Click and drag the divider to resize\n 240→- **Keyboard**: Use `[` to move divider left, `]` to move divider right\n 241→- Split position is remembered during the session\n 242→\n 243→---\n 244→\n 245→## 📊 Output Structure\n 246→\n 247→After running the pipeline, results are organized in `output/results///`:\n 248→\n 249→```\n 250→output/results/c/Copy_function_using_source_size/\n 251→├── 1_raw.json # Original CodeQL issue data\n 252→├── 1_final.json # LLM conversation and classification\n 253→├── 2_raw.json\n 254→├── 2_final.json\n 255→└── ...\n 256→```\n 257→\n 258→Each `*_final.json` contains:\n 259→- Full LLM conversation (system prompts, user messages, assistant responses, tool calls)\n 260→- Final status code (1337 = vulnerable, 1007 = secure, 7331/3713 = needs more info)\n 261→\n 262→Each `*_raw.json` contains:\n 263→- Original CodeQL issue data\n 264→- Function context\n 265→- Database path (includes org/repo information: `output/databases///`)\n 266→- Issue location\n 267→\n 268→---\n 269→\n 270→## 🛠 Troubleshooting\n 271→\n 272→- **CodeQL CLI not found**: \n 273→ Set `CODEQL_PATH` in your `.env` file to the full path of your CodeQL executable.\n 274→ **On Windows**: The path must end with `.cmd` (e.g., `C:\\path\\to\\codeql\\codeql.cmd`).\n 275→\n 276→- **GitHub rate limits**: \n 277→ Set `GITHUB_TOKEN` in your `.env` file (get token from https://github.com/settings/tokens).\n 278→\n 279→- **LLM issues**: \n 280→ Check your API keys in `.env` file match your selected provider.\n 281→\n 282→- **Import errors in UI**: \n 283→ Make sure you're running from the project root directory, or use `python examples/ui_example.py` which handles path setup.\n 284→\n 285→---\n 286→\n 287→## ⚙️ Configuration Reference\n 288→\n 289→### Environment Variables\n 290→\n 291→All configuration is managed through environment variables in your `.env` file. Here's a complete reference:\n 292→\n 293→#### Required Variables\n 294→\n 295→| Variable | Required For | Description |\n 296→|----------|--------------|-------------|\n 297→| `CODEQL_PATH` | All | Path to CodeQL executable. Defaults to `codeql` if CodeQL is in PATH. Use full path if not in PATH (e.g., `C:\\path\\to\\codeql\\codeql.cmd` on Windows) |\n 298→| `PROVIDER` | All | LLM provider: `openai`, `azure`, `gemini`, `bedrock`, `anthropic`, `mistral`, `groq`, `openrouter`, `ollama`, etc. |\n 299→| `MODEL` | All | Model name (e.g., `gpt-4o`, `gpt-4-turbo`, `gemini-2.5-flash`) |\n 300→\n 301→#### Provider-Specific Required Variables\n 302→\n 303→**OpenAI:**\n 304→| Variable | Description |\n 305→|----------|-------------|\n 306→| `OPENAI_API_KEY` | Your OpenAI API key from [platform.openai.com](https://platform.openai.com/api-keys) |\n 307→\n 308→**Azure OpenAI:**\n 309→| Variable | Description |\n 310→|----------|-------------|\n 311→| `AZURE_OPENAI_API_KEY` or `AZURE_API_KEY` | Your Azure OpenAI API key |\n 312→| `AZURE_OPENAI_ENDPOINT` or `AZURE_API_BASE` | Your Azure OpenAI endpoint URL (e.g., `https://your-resource.openai.azure.com`) |\n 313→| `AZURE_OPENAI_API_VERSION` or `AZURE_API_VERSION` | API version (default: `2024-08-01-preview`) |\n 314→\n 315→**Gemini (Google):**\n 316→| Variable | Description |\n 317→|----------|-------------|\n 318→| `GOOGLE_API_KEY` | Your Google API key from [Google AI Studio](https://makersuite.google.com/app/apikey) |\n 319→\n 320→**AWS Bedrock:**\n 321→| Variable | Required | Description |\n 322→|----------|----------|-------------|\n 323→| `AWS_REGION_NAME` | Yes | AWS region (e.g., `us-east-1`, `us-west-2`) |\n 324→| `AWS_PROFILE` | No* | AWS profile name for SSO/credential file auth |\n 325→| `AWS_ACCESS_KEY_ID` | No* | AWS access key (if not using profile) |\n 326→| `AWS_SECRET_ACCESS_KEY` | No* | AWS secret key (if not using profile) |\n 327→| `AWS_SESSION_TOKEN` | No | Session token for temporary STS credentials |\n 328→\n 329→\\* Authentication: Use `AWS_PROFILE` **or** `AWS_ACCESS_KEY_ID` + `AWS_SECRET_ACCESS_KEY` (+ optional `AWS_SESSION_TOKEN` for STS).\n 330→\n 331→**Bedrock `.env` example (SSO):**\n 332→```env\n 333→PROVIDER=bedrock\n 334→MODEL=anthropic.claude-3-5-sonnet-20241022-v2:0\n 335→AWS_REGION_NAME=us-east-1\n 336→AWS_PROFILE=your-profile\n 337→```\n 338→\n 339→> **⚠️ Prerequisites:**\n 340→> - AWS credentials must be configured (SSO, IAM profile, or access keys) with **permissions to invoke Bedrock models**\n 341→> - **For SSO users:** Run `aws sso login --profile your-profile` before using Vulnhalla\n 342→>\n 343→> **🔧 Important - Model Selection:**\n 344→> When selecting a Bedrock model, make sure it supports **tool calling/function calling** (not all Bedrock models do). Tool calling is a key part of Vulnhalla's analysis flow, so choosing a compatible model makes a big difference in functionality and results. Compatible models include: **Claude 3.x**, **Mistral**, or **Cohere Command R**.\n 345→\n 346→#### Optional Variables\n 347→\n 348→| Variable | Default | Description |\n 349→|----------|---------|-------------|\n 350→| `GITHUB_TOKEN` | - | GitHub API token for higher rate limits. Get from [GitHub Settings > Tokens](https://github.com/settings/tokens) |\n 351→| `GITHUB_API_URL` | `https://api.github.com` | GitHub API URL. For GitHub Enterprise, set to your server's API URL (e.g., `https://github.your-company.com/api/v3`) |\n 352→| `GITHUB_SSL_VERIFY` | `true` | SSL certificate verification. Set to `false` for GitHub Enterprise with self-signed or internal CA certificates |\n 353→| `LLM_TEMPERATURE` | `0.2` | LLM temperature (0.0-2.0). Lower = more deterministic. **Recommended: keep at 0.2** |\n 354→| `LLM_TOP_P` | `0.2` | LLM top-p sampling (0.0-1.0). Lower = more focused. **Recommended: keep at 0.2** |\n 355→| `LOG_LEVEL` | `INFO` | Logging level: `DEBUG`, `INFO`, `WARNING`, or `ERROR`. Controls verbosity of console output |\n 356→| `LOG_FILE` | - | Optional path to log file (e.g., `logs/vulnhalla.log`). If set, logs are written to both console and file. File logging uses DEBUG level for detailed output |\n 357→| `LOG_FORMAT` | `default` | Log format style: `default` (human-readable), or `json` (structured JSON format) |\n 358→| `LOG_VERBOSE_CONSOLE` | `false` | If `true`, WARNING/ERROR/CRITICAL use full format (timestamp - logger - level - message). Default: WARNING/ERROR use simple format (LEVEL - message), INFO always minimal (message only) |\n 359→| `THIRD_PARTY_LOG_LEVEL` | `ERROR` | Log level for third-party libraries (LiteLLM, urllib3, requests). Options: `DEBUG`, `INFO`, `WARNING`, `ERROR`. Default suppresses most third-party noise |\n 360→\n 361→> **⚠️ Important:** Do not increase `LLM_TEMPERATURE` or `LLM_TOP_P` unless you fully understand the impact. Lower values keep the model stable and deterministic, which is critical for security analysis. Higher values may cause the model to become inconsistent, creative, or hallucinate results.\n 362→\n 363→> **📝 Note:** For additional configuration examples, see the `.env.example` file in the project root.\n 364→\n 365→### Configuration Validation\n 366→\n 367→Vulnhalla validates your configuration at startup. If required variables are missing or invalid, you'll see clear error messages indicating what needs to be fixed.\n 368→\n 369→**Common validation errors:**\n 370→- Missing API key for selected provider\n 371→- Invalid provider name (see `PROVIDER` for supported values)\n 372→- Missing Azure endpoint (required for Azure provider)\n 373→- Missing AWS credentials or region (required for Bedrock provider)\n 374→- Invalid CodeQL path (if `CODEQL_PATH` is set but file doesn't exist)\n 375→\n 376→---\n 377→\n 378→## 📝 Status Codes\n 379→\n 380→The LLM uses the following status codes:\n 381→\n 382→- **1337**: Security vulnerability found (True Positive)\n 383→- **1007**: Code is secure, no vulnerability (False Positive)\n 384→- **7331**: More code/information needed to validate security\n 385→- **3713**: Likely not a security problem, but more info needed (used with 7331)\n 386→\n 387→The UI maps these to:\n 388→- `1337` → \"True Positive\"\n 389→- `1007` → \"False Positive\"\n 390→- `7331` or `3713` → \"Needs More Data\"\n 391→\n 392→---\n 393→\n 394→## 🔧 Development\n 395→\n 396→### Running Tests\n 397→\n 398→The project includes basic test infrastructure using pytest:\n 399→\n 400→```bash\n 401→# Run all tests\n 402→poetry run pytest\n 403→\n 404→# Run with verbose output\n 405→poetry run pytest -v\n 406→```\n 407→\n 408→The test suite includes smoke tests to verify the test infrastructure is set up correctly.\n 409→\n 410→### Type Checking\n 411→\n 412→The project uses mypy for static type checking:\n 413→\n 414→```bash\n 415→poetry run mypy src\n 416→```\n 417→\n 418→Type checking is configured in `pyproject.toml` under `[tool.mypy]`.\n 419→The configuration uses a conservative baseline with per-module overrides to allow gradual adoption.\n 420→\n 421→### Project Dependencies\n 422→\n 423→Dependencies are managed via Poetry in `pyproject.toml`:\n 424→- `requests` - HTTP requests for GitHub API\n 425→- `pySmartDL` - Smart download manager for CodeQL databases\n 426→- `litellm` - Unified LLM interface supporting multiple providers\n 427→- `python-dotenv` - Environment variable management\n 428→- `PyYAML` - YAML parsing for CodeQL pack files\n 429→- `textual` - Terminal UI framework\n 430→- `pytest` - Testing framework (dev dependency)\n 431→- `mypy` - Static type checker (dev dependency)\n 432→\n 433→### CodeQL Queries\n 434→\n 435→CodeQL queries are organized in `data/queries//`:\n 436→- `issues/` - Security issue detection queries\n 437→- `tools/` - Helper queries (function trees, classes, global variables, macros)\n 438→\n 439→Each directory contains a `qlpack.yml` file defining the CodeQL pack.\n 440→\n 441→---\n 442→\n 443→## 📄 License\n 444→\n 445→Copyright (c) 2025 CyberArk Software Ltd. All rights reserved.\n 446→\n 447→This repository is licensed under the Apache License, Version 2.0 - see [LICENSE.txt](LICENSE.txt) for more details.\n 448→\n 449→---\n 450→\n 451→## 🤝 Contributing\n 452→\n 453→\n 454→We welcome contributions of all kinds to this repository. For instructions on how to get started and descriptions of our development workflows, please see our [contributing guide](https://github.com/cyberark/Vulnhalla/blob/main/CONTRIBUTING.md).\n 455→\n 456→--- \n 457→### Code of Conduct\n 458→\n 459→Please read and follow our [Code of Conduct](CODE_OF_CONDUCT.md). We are committed to providing a welcoming and inclusive environment for all contributors.\n 460→\n 461→---\n 462→\n 463→## 📧 Contact\n 464→\n 465→Feel free to contact us via GitHub issues if you have any feature requests or project issues.\n 466→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"546e27e1-d31a-4270-b9a5-ed34a071ed9f","timestamp":"2026-02-11T11:15:03.230Z","sourceToolAssistantUUID":"36c246c9-7b08-477c-b084-c695b9203525"} {"parentUuid":"546e27e1-d31a-4270-b9a5-ed34a071ed9f","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","message":{"model":"claude-sonnet-4-5-20250929","id":"msg_016vFh2isEGWyzaAKkdjZX1Y","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01AnJ5i9SiNJFwmmbxfM561E","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/pyproject.toml"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":7,"cache_creation_input_tokens":1275,"cache_read_input_tokens":15552,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1275},"output_tokens":18,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2BhJDxSSDP7jiTyrSBt","type":"assistant","uuid":"61aeaaf0-5097-4f9c-b0b1-a1f35d10432a","timestamp":"2026-02-11T11:15:03.709Z"} {"parentUuid":"61aeaaf0-5097-4f9c-b0b1-a1f35d10432a","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01AnJ5i9SiNJFwmmbxfM561E","parentToolUseID":"toolu_01AnJ5i9SiNJFwmmbxfM561E","uuid":"635f06d9-d7dd-4e1d-ab67-867d6609d43c","timestamp":"2026-02-11T11:15:03.712Z"} {"parentUuid":"635f06d9-d7dd-4e1d-ab67-867d6609d43c","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01AnJ5i9SiNJFwmmbxfM561E","toolUseID":"toolu_01AnJ5i9SiNJFwmmbxfM561E","timestamp":"2026-02-11T11:15:03.759Z","uuid":"eee810f0-fe88-4633-a7b6-69360dc9f4e7"} {"parentUuid":"eee810f0-fe88-4633-a7b6-69360dc9f4e7","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01AnJ5i9SiNJFwmmbxfM561E","toolUseID":"toolu_01AnJ5i9SiNJFwmmbxfM561E","timestamp":"2026-02-11T11:15:03.759Z","uuid":"293dc358-7755-46f8-a4a9-c93ad63b64b7"} {"parentUuid":"61aeaaf0-5097-4f9c-b0b1-a1f35d10432a","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01AnJ5i9SiNJFwmmbxfM561E","type":"tool_result","content":" 1→[tool.poetry]\n 2→name = \"vulnhalla\"\n 3→version = \"0.1.0\"\n 4→description = \"Automated CodeQL Analysis with LLM Classification\"\n 5→readme = \"README.md\"\n 6→license = \"Apache-2.0\"\n 7→authors = [\"CyberArk Software Ltd. \"]\n 8→repository = \"https://github.com/cyberark/Vulnhalla\"\n 9→\n 10→[tool.poetry.dependencies]\n 11→python = \">=3.10,<3.14\"\n 12→# Python version constraint: >=3.10,<3.14\n 13→# - Minimum 3.10\n 14→# - Maximum <3.14: Not supported due to grpcio wheels unavailable\n 15→\n 16→requests = \"^2.31.0\"\n 17→python-dotenv = \"^1.0.0\"\n 18→litellm = \"^1.0.0\"\n 19→PyYAML = \"^6.0\"\n 20→textual = \"^0.40.0\"\n 21→pySmartDL = \"^1.3.4\"\n 22→boto3 = \"^1.34.0\"\n 23→[tool.poetry.group.dev.dependencies]\n 24→pytest = \"^7.4.0\"\n 25→mypy = \"^1.11.0\"\n 26→types-requests = \"^2.31.0\"\n 27→types-PyYAML = \"^6.0\"\n 28→\n 29→[tool.poetry.scripts]\n 30→vulnhalla-setup = \"src.vulnhalla_setup:main\"\n 31→vulnhalla = \"src.pipeline:main_analyze\"\n 32→vulnhalla-ui = \"src.pipeline:main_ui\"\n 33→vulnhalla-validate = \"src.pipeline:main_validate\"\n 34→vulnhalla-list = \"src.pipeline:main_list\"\n 35→vulnhalla-example = \"src.pipeline:main_example\"\n 36→\n 37→[build-system]\n 38→requires = [\"poetry-core\"]\n 39→build-backend = \"poetry.core.masonry.api\"\n 40→\n 41→[tool.mypy]\n 42→# Mypy configuration - conservative baseline for gradual adoption\n 43→python_version = \"3.10\"\n 44→\n 45→# Handle namespace packages correctly (src/ is not a proper package)\n 46→namespace_packages = true\n 47→explicit_package_bases = true\n 48→\n 49→# Allow imports from third-party libraries without stubs\n 50→ignore_missing_imports = true\n 51→\n 52→# Useful warnings that catch common issues\n 53→warn_unused_ignores = true\n 54→warn_redundant_casts = true\n 55→no_implicit_optional = true\n 56→\n 57→# Exclude non-source directories from type checking\n 58→exclude = [\n 59→ \"^tests/\",\n 60→ \"^output/\",\n 61→ \"^data/\",\n 62→ \"^examples/\",\n 63→ \"__pycache__\",\n 64→ \"^build/\",\n 65→ \"^dist/\",\n 66→]\n 67→\n 68→# Per-module overrides for gradual adoption\n 69→# UI modules use Textual framework with complex typing; relax checks\n 70→[[tool.mypy.overrides]]\n 71→module = [\n 72→ \"src.ui.*\",\n 73→ \"src.ui.components.*\",\n 74→]\n 75→# Textual widgets have dynamic attributes and require gradual typing\n 76→disable_error_code = [\"attr-defined\", \"misc\", \"arg-type\", \"var-annotated\", \"assignment\"]\n 77→\n 78→# LLM module works with dynamic dict structures from API responses\n 79→[[tool.mypy.overrides]]\n 80→module = \"src.llm.*\"\n 81→disable_error_code = [\"attr-defined\"]\n 82→\n 83→# Main modules have some legacy typing issues to fix later\n 84→[[tool.mypy.overrides]]\n 85→module = [\n 86→ \"src.vulnhalla\",\n 87→ \"src.pipeline\",\n 88→]\n 89→disable_error_code = [\"arg-type\", \"call-arg\", \"operator\"]\n 90→\n 91→# Utils and setup modules with some Optional handling to fix later\n 92→[[tool.mypy.overrides]]\n 93→module = [\n 94→ \"src.utils.logger\",\n 95→ \"src.vulnhalla_setup\",\n 96→]\n 97→disable_error_code = [\"union-attr\"]\n 98→\n 99→# CodeQL modules have some type annotation and return type issues\n 100→[[tool.mypy.overrides]]\n 101→module = \"src.codeql.*\"\n 102→disable_error_code = [\"var-annotated\", \"return-value\", \"union-attr\", \"arg-type\", \"assignment\"]\n 103→\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"333847ff-1444-4e47-be04-aa9209f55ec2","timestamp":"2026-02-11T11:15:03.758Z","sourceToolAssistantUUID":"61aeaaf0-5097-4f9c-b0b1-a1f35d10432a"} {"parentUuid":"333847ff-1444-4e47-be04-aa9209f55ec2","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","message":{"model":"claude-sonnet-4-5-20250929","id":"msg_016vFh2isEGWyzaAKkdjZX1Y","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/pytest.ini"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":7,"cache_creation_input_tokens":1275,"cache_read_input_tokens":15552,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1275},"output_tokens":18,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2BhJDxSSDP7jiTyrSBt","type":"assistant","uuid":"f8a87084-1867-4466-bd30-fff7f332c2cf","timestamp":"2026-02-11T11:15:04.072Z"} {"parentUuid":"f8a87084-1867-4466-bd30-fff7f332c2cf","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","parentToolUseID":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","uuid":"91a3733b-799a-43eb-b5f1-6c705b7f2d10","timestamp":"2026-02-11T11:15:04.076Z"} {"parentUuid":"91a3733b-799a-43eb-b5f1-6c705b7f2d10","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","toolUseID":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","timestamp":"2026-02-11T11:15:04.112Z","uuid":"d6dcbc32-adcb-4502-81de-3e532becbfa8"} {"parentUuid":"d6dcbc32-adcb-4502-81de-3e532becbfa8","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","toolUseID":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","timestamp":"2026-02-11T11:15:04.112Z","uuid":"d6a69e40-4551-4059-a90d-bb968f7d0e22"} {"parentUuid":"f8a87084-1867-4466-bd30-fff7f332c2cf","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01Ea3HfL4pS2oiZ5MJhCTxhF","type":"tool_result","content":" 1→[pytest]\n 2→testpaths = tests\n 3→python_files = test_*.py\n 4→python_classes = Test*\n 5→python_functions = test_*\n 6→addopts = \n 7→ -v\n 8→ --strict-markers\n 9→ --tb=short\n\n\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n\n"}]},"uuid":"e2603174-0c80-44ee-9677-5d5c35b012bc","timestamp":"2026-02-11T11:15:04.111Z","sourceToolAssistantUUID":"f8a87084-1867-4466-bd30-fff7f332c2cf"} {"parentUuid":"e2603174-0c80-44ee-9677-5d5c35b012bc","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","message":{"model":"claude-sonnet-4-5-20250929","id":"msg_016vFh2isEGWyzaAKkdjZX1Y","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_012EMpGAwjGYDCm6VUK1d6DT","name":"Read","input":{"file_path":"/home/josie/development/personal/Vulnhalla/.env.example"}}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":7,"cache_creation_input_tokens":1275,"cache_read_input_tokens":15552,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1275},"output_tokens":18,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CY2BhJDxSSDP7jiTyrSBt","type":"assistant","uuid":"43448287-5327-4ca9-9784-420514cf4934","timestamp":"2026-02-11T11:15:04.658Z"} {"parentUuid":"43448287-5327-4ca9-9784-420514cf4934","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PreToolUse","hookName":"PreToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/pretooluse.py"},"toolUseID":"toolu_012EMpGAwjGYDCm6VUK1d6DT","parentToolUseID":"toolu_012EMpGAwjGYDCm6VUK1d6DT","uuid":"63ab8e94-00db-47d1-ad8e-947607665b5e","timestamp":"2026-02-11T11:15:04.660Z"} {"parentUuid":"63ab8e94-00db-47d1-ad8e-947607665b5e","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"python3 ${CLAUDE_PLUGIN_ROOT}/hooks/posttooluse.py"},"parentToolUseID":"toolu_012EMpGAwjGYDCm6VUK1d6DT","toolUseID":"toolu_012EMpGAwjGYDCm6VUK1d6DT","timestamp":"2026-02-11T11:15:04.692Z","uuid":"87291e73-2acd-4ead-8eea-7b6358443e1b"} {"parentUuid":"87291e73-2acd-4ead-8eea-7b6358443e1b","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"progress","data":{"type":"hook_progress","hookEvent":"PostToolUse","hookName":"PostToolUse:Read","command":"callback"},"parentToolUseID":"toolu_012EMpGAwjGYDCm6VUK1d6DT","toolUseID":"toolu_012EMpGAwjGYDCm6VUK1d6DT","timestamp":"2026-02-11T11:15:04.692Z","uuid":"ed325b3a-6895-4764-ad7f-46bffdbc2cc2"} {"parentUuid":"43448287-5327-4ca9-9784-420514cf4934","isSidechain":true,"userType":"external","cwd":"/home/josie/development/personal/Vulnhalla","sessionId":"b8fa86be-f37b-48ee-ad6c-420dbe158ef1","version":"2.1.38","gitBranch":"main","agentId":"a5ceee0","slug":"synthetic-yawning-mountain","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_012EMpGAwjGYDCm6VUK1d6DT","type":"tool_result","content":" 1→# CodeQL Configuration\n 2→\n 3→# Path to CodeQL executable (required)\n 4→# Examples:\n 5→# Linux/macOS: /usr/local/bin/codeql or /path/to/codeql\n 6→# Windows: IMPORTANT - Path MUST end with .cmd\n 7→# Example: C:\\path\\to\\codeql\\codeql.cmd\n 8→# Use forward slashes or escaped backslashes: C:/path/to/codeql/codeql.cmd\n 9→# Or use raw string format: r\"C:\\path\\to\\codeql\\codeql.cmd\"\n 10→CODEQL_PATH=\"your_codeql_path\"\n 11→\n 12→# GitHub Configuration (optional, for higher rate limits)\n 13→# Get token from: https://github.com/settings/tokens\n 14→# GITHUB_TOKEN=ghp_your_token_here\n 15→\n 16→# GitHub Enterprise Server (optional)\n 17→# For GitHub Enterprise, set the API URL. Default: https://api.github.com\n 18→# GITHUB_API_URL=https://github.your-company.com/api/v3\n 19→#\n 20→# SSL Certificate Verification (optional)\n 21→# Set to false for GitHub Enterprise with self-signed or internal CA certificates\n 22→# GITHUB_SSL_VERIFY=false\n 23→\n 24→# LLM Configuration\n 25→# Copy this file to .env and fill in your API keys\n 26→\n 27→# Provider selection (required)\n 28→# Allowed providers: openai, azure, gemini, bedrock, anthropic, mistral, groq, ollama\n 29→\n 30→# Model name (required, provider-specific)\n 31→# Examples by provider:\n 32→# OpenAI: gpt-4o, gpt-4o-mini, gpt-4-turbo\n 33→# Azure: gpt-4o, gpt-4\n 34→# Google AI Studio: gemini-2.5-flash, gemini-2.0-flash\n 35→# Bedrock: anthropic.claude-3-5-sonnet-20241022-v2:0, anthropic.claude-3-haiku-20240307-v1:0\n 36→\n 37→# Optional: Override default LLM parameters\n 38→# NOTE:\n 39→# Do NOT increase these values unless you fully understand the impact.\n 40→# Lower values keep the model stable and deterministic — critical for security analysis.\n 41→# Higher values may cause the model to become inconsistent, creative, or hallucinate results.\n 42→# Recommended: leave these at their default values.\n 43→# LLM_TEMPERATURE=0.2\n 44→# LLM_TOP_P=0.2\n 45→\n 46→# ============================================================================\n 47→# Provider-Specific Configuration\n 48→# ============================================================================\n 49→# Uncomment and fill in the section for your chosen provider\n 50→\n 51→# ----------------------------------------------------------------------------\n 52→# OpenAI\n 53→# ----------------------------------------------------------------------------\n 54→PROVIDER=openai\n 55→MODEL=gpt-4o\n 56→OPENAI_API_KEY=\"your_api_key\"\n 57→\n 58→# ----------------------------------------------------------------------------\n 59→# Azure OpenAI\n 60→# ----------------------------------------------------------------------------\n 61→# AZURE_OPENAI_API_KEY=\"your_api_key\"\n 62→# AZURE_OPENAI_ENDPOINT=\"https://your-name.openai.azure.com/\"\n 63→# AZURE_OPENAI_API_VERSION=\"2024-08-01-preview\"\n 64→# PROVIDER=azure\n 65→# MODEL=gpt-4o\n 66→\n 67→# ----------------------------------------------------------------------------\n 68→# Google AI Studio\n 69→# ----------------------------------------------------------------------------\n 70→# GOOGLE_API_KEY=\"your_api_key\"\n 71→# PROVIDER=gemini\n 72→# MODEL=gemini-2.5-flash\n 73→\n 74→# ----------------------------------------------------------------------------\n 75→# AWS Bedrock\n 76→# ----------------------------------------------------------------------------\n 77→# PROVIDER=bedrock\n 78→# MODEL=us.anthropic.claude-3-5-sonnet-20241022-v2:0\n 79→# AWS_REGION_NAME=us-east-1\n 80→#\n 81→# Authentication (choose one method):\n 82→#\n 83→# Method 1: AWS SSO (recommended for development)\n 84→# First run: aws sso login --profile your-profile\n 85→# AWS_PROFILE=your-profile\n 86→#\n 87→# Method 2: Static credentials (IAM user)\n 88→# AWS_ACCESS_KEY_ID=AKIA...\n 89→# AWS_SECRET_ACCESS_KEY=...\n 90→#\n 91→# Method 3: Temporary credentials (STS)\n 92→# AWS_ACCESS_KEY_ID=ASIA...\n 93→# AWS_SECRET_ACCESS_KEY=...\n 94→# AWS_SESSION_TOKEN=...\n 95→#\n 96→# Note: Tool calling requires Claude 3.x, Mistral, or Cohere Command R models.\n 97→# Amazon Titan and Meta Llama models do not support function calling.\n 98→\n 99→# Logging Configuration\n 100→\n 101→# DEBUG, INFO, WARNING, ERROR\n 102→LOG_LEVEL=INFO\n 103→\n 104→# Optional: path to log file (e.g., logs/vulnhalla.log)\n 105→# If empty or commented out, no file logging is used\n 106→# LOG_FILE=logs/vulnhalla.log\n 107→LOG_FILE=\n 108→\n 109→# default or json\n 110→LOG_FORMAT=default\n 111→\n 112→# Console format control:\n 113→# - Default: INFO messages are minimal (message only) \n 114→# WARNING/ERROR/CRITICAL use simple format (LEVEL - message)\n 115→# - If LOG_VERBOSE_CONSOLE=true: \n 116→# WARNING/ERROR/CRITICAL use full format\n 117→# (timestamp - logger - level - message)\n 118→# - INFO always remains minimal regardless of verbose mode\n 119→LOG_VERBOSE_CONSOLE=false\n 120→\n 121→# Control third-party library logging verbosity (LiteLLM, urllib3, requests). 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